Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072745 | Potato | nucleus | 92.83 | 92.83 |
| Solyc02g077920.2.1 | Tomato | nucleus | 11.11 | 45.59 |
| Solyc10g009080.2.1 | Tomato | nucleus | 10.57 | 43.7 |
| Solyc07g053810.2.1 | Tomato | nucleus | 11.29 | 42.86 |
| Solyc07g062980.2.1 | Tomato | nucleus | 9.5 | 40.15 |
| Bra004363.1-P | Field mustard | nucleus | 20.61 | 38.21 |
| CDX95958 | Canola | nucleus | 20.43 | 38.13 |
| Bra038324.1-P | Field mustard | nucleus | 21.15 | 36.2 |
| CDX96251 | Canola | nucleus | 21.15 | 35.98 |
| CDY50300 | Canola | nucleus | 21.15 | 35.98 |
| CDY69014 | Canola | nucleus | 20.43 | 35.74 |
| CDX81606 | Canola | nucleus | 21.15 | 35.44 |
| KRH75117 | Soybean | nucleus | 28.67 | 33.13 |
| Solyc03g114850.2.1 | Tomato | nucleus | 15.59 | 32.83 |
| KRH70968 | Soybean | nucleus | 28.32 | 32.78 |
| AT1G69170.1 | Thale cress | nucleus | 22.22 | 30.62 |
| Solyc05g015840.2.1 | Tomato | nucleus | 15.23 | 27.24 |
| Solyc10g018780.1.1 | Tomato | nucleus | 13.8 | 26.28 |
| Solyc10g078700.1.1 | Tomato | nucleus | 17.2 | 25.81 |
| Solyc12g038520.1.1 | Tomato | nucleus | 20.43 | 25.5 |
| Solyc01g090730.2.1 | Tomato | nucleus | 13.08 | 24.41 |
| VIT_01s0011g00130.t01 | Wine grape | nucleus | 19.71 | 21.7 |
| Solyc04g045560.2.1 | Tomato | nucleus | 12.9 | 20.57 |
| Solyc05g015510.2.1 | Tomato | nucleus | 16.31 | 19.65 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 |
| InterPro:IPR004333 | InterPro:IPR036893 | UniProt:K4BXS7 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF22 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | EnsemblPlantsGene:Solyc05g012040.2 | EnsemblPlants:Solyc05g012040.2.1 |
| UniParc:UPI00027673E4 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:5268986..5273711
Molecular Weight (calculated)
62332.9 Da
IEP (calculated)
7.601
GRAVY (calculated)
-0.664
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPLSYALEG RGLIFPDNVE LSVDTVSRNR SIVKEWNLNP FCDVDKSICG FSQEVTENTE FLGSGIADIL KKSAASNPCP GVLSGEMSDG CGKMLSSTSM
101: FNSFEPIPGE VGLGAMFNNS ATKSNNPMSS LIDLKLEELT DHGELRTNQS SKESSILSSP ESSLAAGKAQ TKSSHSRFSI SQVHDQKEEE STTVYREVKS
201: NQSLKRNSAL TSVNSSLQGK RLRTTNFHSE IPVCQVHGCN KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG
301: HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN SKHPKLEHKP FGISQLAISV KNEQFPAKSI QHQYGMRKQD PSKVHTGGTT
401: LSIQEFSKGQ NSSCALSLLS AHSQNLLHNS TDVSPTLRWT VEPNHHVYVK GRDHNLEKSP RVSVVKSLTP TELYSSDVAE QDVVVQVPDC EAVSFGIQRD
501: HGHDQRSNSI NSKNCLSLEG GPTMDLVQLS SHLQRVEQQK NSVQVKQEND IFCSFTST
101: FNSFEPIPGE VGLGAMFNNS ATKSNNPMSS LIDLKLEELT DHGELRTNQS SKESSILSSP ESSLAAGKAQ TKSSHSRFSI SQVHDQKEEE STTVYREVKS
201: NQSLKRNSAL TSVNSSLQGK RLRTTNFHSE IPVCQVHGCN KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG
301: HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN SKHPKLEHKP FGISQLAISV KNEQFPAKSI QHQYGMRKQD PSKVHTGGTT
401: LSIQEFSKGQ NSSCALSLLS AHSQNLLHNS TDVSPTLRWT VEPNHHVYVK GRDHNLEKSP RVSVVKSLTP TELYSSDVAE QDVVVQVPDC EAVSFGIQRD
501: HGHDQRSNSI NSKNCLSLEG GPTMDLVQLS SHLQRVEQQK NSVQVKQEND IFCSFTST
001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
Arabidopsis Description
SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.