Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g012040.2.1 | Tomato | nucleus | 92.83 | 92.83 |
| PGSC0003DMT400076399 | Potato | nucleus | 11.47 | 47.06 |
| PGSC0003DMT400058753 | Potato | nucleus | 10.39 | 42.96 |
| PGSC0003DMT400085174 | Potato | nucleus | 9.68 | 40.6 |
| PGSC0003DMT400082789 | Potato | nucleus | 11.65 | 39.39 |
| Bra004363.1-P | Field mustard | nucleus | 20.25 | 37.54 |
| CDX95958 | Canola | nucleus | 20.07 | 37.46 |
| CDY69014 | Canola | nucleus | 20.25 | 35.42 |
| Bra038324.1-P | Field mustard | nucleus | 20.61 | 35.28 |
| CDX96251 | Canola | nucleus | 20.61 | 35.06 |
| CDY50300 | Canola | nucleus | 20.61 | 35.06 |
| CDX81606 | Canola | nucleus | 20.61 | 34.53 |
| KRH75117 | Soybean | nucleus | 28.85 | 33.33 |
| KRH70968 | Soybean | nucleus | 28.67 | 33.2 |
| AT1G69170.1 | Thale cress | nucleus | 21.68 | 29.88 |
| PGSC0003DMT400056374 | Potato | nucleus | 15.59 | 27.27 |
| PGSC0003DMT400029751 | Potato | nucleus | 17.03 | 25.54 |
| PGSC0003DMT400074976 | Potato | nucleus | 13.26 | 25.26 |
| PGSC0003DMT400066955 | Potato | nucleus | 13.62 | 25.17 |
| PGSC0003DMT400059813 | Potato | nucleus | 20.43 | 25.0 |
| PGSC0003DMT400063046 | Potato | nucleus | 20.43 | 22.09 |
| PGSC0003DMT400068752 | Potato | nucleus | 14.87 | 21.56 |
| VIT_01s0011g00130.t01 | Wine grape | nucleus | 19.53 | 21.5 |
| PGSC0003DMT400084734 | Potato | nucleus | 16.67 | 20.0 |
Protein Annotations
| EntrezGene:102588358 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M1CQV7 | PFAM:PF03110 | EnsemblPlantsGene:PGSC0003DMG400028308 |
| PGSC:PGSC0003DMG400028308 | EnsemblPlants:PGSC0003DMT400072745 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF22 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0002948E58 | RefSeq:XP_006348665.1 | SEG:seg | : |
Description
LIGULELESS1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028308]
Coordinates
chr5:-:726140..731011
Molecular Weight (calculated)
62486.3 Da
IEP (calculated)
7.617
GRAVY (calculated)
-0.628
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPLSYALEG RGLIFPDNVE LSVDTVSRSR SIVKEWNLNP FCDVDKSICG FSQEVTESTE FLGSGIADIL KKSAASNPCP GVLSGEMSDG CGKMLSSTSM
101: FNTFEPIPGE VGLGAMFNQR ATKSNNPMSS LIDLKLEELT DHGELRTSQS SKESSILSSP ESSLAAGKAQ TKRLHSQFSI TQVRGQKEVE STTVYREIKS
201: NQSLKRNSAL SSVNSSLQGK RLRTTNFHSE IPVCQVHGCN KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG
301: HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN NKHLKLEHKP FGISQLAMSV KNEQFPAKSI QHHYGVKKQD PSKVLSGGET
401: LSVQEFSEGQ NSSCALSLLS AHSQNLLHNS TDVSPTLRWT VEPNHHVYIK GDHHNLEKSP RVSVANRLTP IELYSFDVAE QDAVVQVPDS DAVSFGIQRD
501: HGHDQRSNSI NSRNCLSPEF GPTMDLVQLS SHLQRVEQQK NSVQVKQEND IFCSFTST
101: FNTFEPIPGE VGLGAMFNQR ATKSNNPMSS LIDLKLEELT DHGELRTSQS SKESSILSSP ESSLAAGKAQ TKRLHSQFSI TQVRGQKEVE STTVYREIKS
201: NQSLKRNSAL SSVNSSLQGK RLRTTNFHSE IPVCQVHGCN KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG
301: HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN NKHLKLEHKP FGISQLAMSV KNEQFPAKSI QHHYGVKKQD PSKVLSGGET
401: LSVQEFSEGQ NSSCALSLLS AHSQNLLHNS TDVSPTLRWT VEPNHHVYIK GDHHNLEKSP RVSVANRLTP IELYSFDVAE QDAVVQVPDS DAVSFGIQRD
501: HGHDQRSNSI NSRNCLSPEF GPTMDLVQLS SHLQRVEQQK NSVQVKQEND IFCSFTST
001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
Arabidopsis Description
SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.