Factsheet for PGSC0003DMT400063046

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114850.2.1	Tomato	nucleus	45.35	88.3
PGSC0003DMT400076399	Potato	nucleus	11.05	41.91
PGSC0003DMT400058753	Potato	nucleus	10.47	40.0
PGSC0003DMT400082789	Potato	nucleus	12.4	38.79
PGSC0003DMT400085174	Potato	nucleus	9.69	37.59
Bra004363.1-P	Field mustard	nucleus	18.22	31.23
CDX95958	Canola	nucleus	17.83	30.77
CDY69014	Canola	nucleus	17.83	28.84
CDY50300	Canola	nucleus	18.22	28.66
Bra038324.1-P	Field mustard	nucleus	18.02	28.53
CDX96251	Canola	nucleus	18.02	28.35
CDX81606	Canola	nucleus	18.02	27.93
PGSC0003DMT400059813	Potato	nucleus	23.64	26.75
KRH54739	Soybean	nucleus	18.41	25.0
KRH03167	Soybean	nucleus	25.97	24.63
KRH56776	Soybean	nucleus	25.97	24.41
PGSC0003DMT400074976	Potato	nucleus	13.76	24.23
AT1G69170.1	Thale cress	nucleus	18.8	23.95
PGSC0003DMT400056374	Potato	nucleus	14.53	23.51
VIT_17s0000g05020.t01	Wine grape	nucleus	24.81	22.98
PGSC0003DMT400066955	Potato	nucleus	13.37	22.85
KRH63174	Soybean	nucleus	24.03	21.99
PGSC0003DMT400029751	Potato	nucleus	14.92	20.7
PGSC0003DMT400072745	Potato	nucleus	22.09	20.43
PGSC0003DMT400068752	Potato	nucleus	12.02	16.1
PGSC0003DMT400084734	Potato	nucleus	13.57	15.05

Protein Annotations

EntrezGene:102583706	MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	UniProt:M1C9Z6	PFAM:PF03110	EnsemblPlantsGene:PGSC0003DMG400024527	PGSC:PGSC0003DMG400024527
EnsemblPlants:PGSC0003DMT400063046	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF22	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI000294ABAC	RefSeq:XP_006345103.1	SEG:seg	:	:

Description

LIGULELESS1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024527]

Coordinates

chr3:+:54826596..54832614

Molecular Weight (calculated)

56431.0 Da

IEP (calculated)

9.009

GRAVY (calculated)

-0.592

Length

516 amino acids

Sequence
(BLAST)

001: MESWSYFSGE KGFVSEESVS VNDGMGRVKN GVMGWELKTQ SSYGMCSSDN QGFHELGSPN LMRKPMFTDQ MRDGFTSSKH WGGGIFGAFS GEDKSSSKLS
101: SSAVDSISKD SSLIDLKLGR FPDHGNIFKS PKSSTSAESI VPAKRMRAGG LNSHKPFCQV QGCGKDLSSC KDYHKRHKVC EVHSKTAKVI VNGIEQRFCQ
201: QCSRFHLLAE FDDGKRSCRK RLAGHNERRR KPPHTGTRFR GTSFATSSFA CQDILGSRYL HQPKYEMSDW YKNVKVEDGV DYSPQLAMPF TNGQLQSKSH
301: FTSYHAKKGC HSFHDGLPAV TTSRINESTN SSLHDMRGSD FVSPSLFHIT STGSEVLHAL DTSSIQGLSG ISNSSNALSL LSSQSQGSSD HSTVFSTSRP
401: LIQSNNNYNV TQASKNVLGL GPQVSAGRMS NTFTNSSGVN SAEGGLDQML FPSNTCGINR IIEGSDLVNP KNQLSCEGGP TIDLLQLSSQ LQRVEHQRFS
501: MQVKQDGNAF PGLRIT

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.