Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g015840.2.1 | Tomato | nucleus | 94.36 | 96.47 |
| VIT_01s0010g03910.t01 | Wine grape | nucleus | 57.37 | 47.04 |
| PGSC0003DMT400076399 | Potato | nucleus | 16.61 | 38.97 |
| PGSC0003DMT400058753 | Potato | nucleus | 16.3 | 38.52 |
| PGSC0003DMT400085174 | Potato | nucleus | 15.67 | 37.59 |
| VIT_17s0000g01260.t01 | Wine grape | nucleus | 46.08 | 36.66 |
| KRH63786 | Soybean | nucleus | 42.32 | 36.39 |
| KRH59812 | Soybean | nucleus | 42.95 | 35.13 |
| CDX84872 | Canola | nucleus | 36.99 | 34.6 |
| CDY45826 | Canola | nucleus | 36.99 | 34.6 |
| Bra022766.1-P | Field mustard | nucleus | 36.99 | 34.5 |
| KRH41121 | Soybean | nucleus | 42.63 | 34.34 |
| CDY34028 | Canola | nucleus | 35.11 | 32.18 |
| AT5G50670.2 | Thale cress | nucleus | 36.05 | 32.03 |
| AT5G50570.2 | Thale cress | nucleus | 36.05 | 32.03 |
| KRH54164 | Soybean | nucleus | 41.38 | 31.88 |
| CDX71667 | Canola | nucleus | 35.74 | 31.75 |
| PGSC0003DMT400082789 | Potato | nucleus | 16.3 | 31.52 |
| PGSC0003DMT400029751 | Potato | nucleus | 25.71 | 22.04 |
| PGSC0003DMT400074976 | Potato | nucleus | 19.12 | 20.82 |
| PGSC0003DMT400066955 | Potato | nucleus | 19.12 | 20.2 |
| PGSC0003DMT400059813 | Potato | nucleus | 28.53 | 19.96 |
| PGSC0003DMT400068752 | Potato | nucleus | 23.82 | 19.74 |
| PGSC0003DMT400084734 | Potato | nucleus | 23.51 | 16.13 |
| PGSC0003DMT400072745 | Potato | nucleus | 27.27 | 15.59 |
| PGSC0003DMT400063046 | Potato | nucleus | 23.51 | 14.53 |
Protein Annotations
| EntrezGene:102583420 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 |
| InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M1BZC8 | PFAM:PF03110 | EnsemblPlantsGene:PGSC0003DMG400021902 | PGSC:PGSC0003DMG400021902 |
| EnsemblPlants:PGSC0003DMT400056374 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF29 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI0002958524 | RefSeq:XP_006352164.1 | RefSeq:XP_006352165.1 | RefSeq:XP_006352166.1 | RefSeq:XP_015166296.1 |
| RefSeq:XP_015166297.1 | RefSeq:XP_015166298.1 | RefSeq:XP_015166299.1 | SEG:seg | : | : |
Description
Squamosa promoter-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021902]
Coordinates
chr5:+:15021023..15024830
Molecular Weight (calculated)
34804.2 Da
IEP (calculated)
7.849
GRAVY (calculated)
-0.660
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSSSSSSS KRAKAPGNIA HCLVDGCNAD LSECREYHRR HKVCEVHSKT AKVTIAGRDQ RFCQQCSRFH SLVEFDDGKR SCRKRLDGHN RRRRKPQPDS
101: MAKNSGLLFG QQGTKLLSFS SQQIFPSAVV SSAWAGVVKT DSDMVLYNNQ SHMNGMDSQN SFPDSSGHSY TGGSQFQFMQ GSDHSLTESS SICQPLFEHP
201: TSAAGISSSG QKIFSSGLND IVDSDRALSL LSSAPAVTRE IGLSHMVQQP ASIPRSQSQG LQYDGLSHFP FGQDFNSKPQ DSHVSNSSNP LHFHDMLQNA
301: QDGSSTSGGS QQTLAFMWD
101: MAKNSGLLFG QQGTKLLSFS SQQIFPSAVV SSAWAGVVKT DSDMVLYNNQ SHMNGMDSQN SFPDSSGHSY TGGSQFQFMQ GSDHSLTESS SICQPLFEHP
201: TSAAGISSSG QKIFSSGLND IVDSDRALSL LSSAPAVTRE IGLSHMVQQP ASIPRSQSQG LQYDGLSHFP FGQDFNSKPQ DSHVSNSSNP LHFHDMLQNA
301: QDGSSTSGGS QQTLAFMWD
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.