Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84872 | Canola | nucleus | 95.6 | 95.6 |
| Bra022766.1-P | Field mustard | nucleus | 95.6 | 95.32 |
| AT5G50670.2 | Thale cress | nucleus | 80.94 | 76.88 |
| AT5G50570.2 | Thale cress | nucleus | 80.94 | 76.88 |
| CDX71667 | Canola | nucleus | 79.77 | 75.77 |
| CDY34028 | Canola | nucleus | 75.66 | 74.14 |
| VIT_17s0000g01260.t01 | Wine grape | nucleus | 45.75 | 38.9 |
| CDY17204 | Canola | nucleus | 15.84 | 38.03 |
| KRH59812 | Soybean | nucleus | 43.11 | 37.69 |
| Solyc05g015840.2.1 | Tomato | nucleus | 34.31 | 37.5 |
| CDY27935 | Canola | nucleus | 16.13 | 37.41 |
| KRH63786 | Soybean | nucleus | 40.47 | 37.2 |
| PGSC0003DMT400056374 | Potato | nucleus | 34.6 | 36.99 |
| KRH41121 | Soybean | nucleus | 42.82 | 36.87 |
| CDY57212 | Canola | nucleus | 14.96 | 36.17 |
| CDY50515 | Canola | nucleus | 16.13 | 35.03 |
| CDY24113 | Canola | nucleus | 16.42 | 34.78 |
| CDY37684 | Canola | nucleus | 14.37 | 34.75 |
| KRH54164 | Soybean | nucleus | 41.94 | 34.54 |
| VIT_01s0010g03910.t01 | Wine grape | nucleus | 39.3 | 34.45 |
| CDY61210 | Canola | nucleus | 16.72 | 31.84 |
| CDY25876 | Canola | nucleus | 15.84 | 30.68 |
| CDX97645 | Canola | nucleus | 15.54 | 29.61 |
| CDX98540 | Canola | nucleus | 15.25 | 29.05 |
| CDY20128 | Canola | nucleus | 14.66 | 28.41 |
| CDX79544 | Canola | nucleus | 15.54 | 28.34 |
| CDY32310 | Canola | nucleus | 14.37 | 27.84 |
| CDX95958 | Canola | nucleus | 22.29 | 25.42 |
| CDX96251 | Canola | nucleus | 24.05 | 25.0 |
| CDY50300 | Canola | nucleus | 23.75 | 24.7 |
| CDY61750 | Canola | nucleus | 22.29 | 24.68 |
| CDX81606 | Canola | nucleus | 23.75 | 24.32 |
| CDX98259 | Canola | nucleus | 23.17 | 24.31 |
| CDY69014 | Canola | nucleus | 22.29 | 23.82 |
| CDX67715 | Canola | nucleus | 21.11 | 22.78 |
| CDY06881 | Canola | nucleus | 24.05 | 22.59 |
| CDY47656 | Canola | nucleus | 21.41 | 22.53 |
| CDX79888 | Canola | nucleus | 24.05 | 22.28 |
| CDY53504 | Canola | nucleus | 24.05 | 22.16 |
| CDY43604 | Canola | nucleus | 24.93 | 22.08 |
| CDY14818 | Canola | nucleus | 23.46 | 21.8 |
| CDY32959 | Canola | nucleus | 24.05 | 21.03 |
| CDY67700 | Canola | nucleus | 21.11 | 20.81 |
| CDX90071 | Canola | nucleus | 18.77 | 20.51 |
| CDY03914 | Canola | nucleus | 22.29 | 20.43 |
| CDY27612 | Canola | nucleus | 19.65 | 20.36 |
| CDY15712 | Canola | nucleus | 22.29 | 20.32 |
| CDY03913 | Canola | nucleus | 21.99 | 20.22 |
| CDX84927 | Canola | nucleus | 21.7 | 20.16 |
| CDX84928 | Canola | nucleus | 21.41 | 20.05 |
| CDY27611 | Canola | nucleus | 21.41 | 20.0 |
| CDY11816 | Canola | nucleus | 21.11 | 19.73 |
| CDY38043 | Canola | nucleus | 19.35 | 19.7 |
| CDY15713 | Canola | nucleus | 22.29 | 19.49 |
| CDY15132 | Canola | nucleus | 11.44 | 16.74 |
| CDY22356 | Canola | nucleus | 24.34 | 15.99 |
| CDY47812 | Canola | nucleus | 24.05 | 15.89 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.76 | 10.34 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078I7H0 | UniProt:A0A078I7H0 | EnsemblPlants:CDY45826 | ProteinID:CDY45826 |
| ProteinID:CDY45826.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00082768001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF29 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0001BA88C9 | SEG:seg | : | : |
Description
BnaC03g16490DBnaC03g16490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7H0]
Coordinates
chrLK032637:+:188732..190483
Molecular Weight (calculated)
37679.6 Da
IEP (calculated)
8.270
GRAVY (calculated)
-0.677
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGRSSSSPR RLQPKEDFPF DLKLGRNIVN SSSSSFSAYG KTEKVISLSK LKESASEASR SSKRTRGNNQ
101: IPICLVDGCD SDFSNCREYH KRHKVCDVHS KTPVVTINGN KQRFCQQCSR FHGLEEFDEG KKSCRKRLDG HNRRRRKPQP DHTDRTATFF QGSKLLDFSS
201: SPHVFPTTSV VSPSWGNGLV SVAMPNGSSY GQNQSYAGSC PARTGITFPI SSSPNSRGKQ FPFLQEEEDS SRMTSCIHDS DCALSLLSSS SSHLLQPQPP
301: LSLSQETVFY GSGLFENASA VSDGSGNEAV PLPQTFPPFH W
101: IPICLVDGCD SDFSNCREYH KRHKVCDVHS KTPVVTINGN KQRFCQQCSR FHGLEEFDEG KKSCRKRLDG HNRRRRKPQP DHTDRTATFF QGSKLLDFSS
201: SPHVFPTTSV VSPSWGNGLV SVAMPNGSSY GQNQSYAGSC PARTGITFPI SSSPNSRGKQ FPFLQEEEDS SRMTSCIHDS DCALSLLSSS SSHLLQPQPP
301: LSLSQETVFY GSGLFENASA VSDGSGNEAV PLPQTFPPFH W
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.