Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32959 | Canola | nucleus | 94.55 | 93.33 |
| Bra027478.1-P | Field mustard | nucleus | 94.29 | 93.08 |
| CDY22356 | Canola | nucleus | 84.68 | 62.81 |
| CDY47812 | Canola | nucleus | 81.82 | 61.05 |
| Os02t0139400-01 | Rice | nucleus | 28.57 | 39.01 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 45.71 | 36.9 |
| CDY17204 | Canola | nucleus | 13.51 | 36.62 |
| CDY37684 | Canola | nucleus | 13.25 | 36.17 |
| CDY57212 | Canola | nucleus | 12.99 | 35.46 |
| CDY27935 | Canola | nucleus | 13.51 | 35.37 |
| CDY03913 | Canola | nucleus | 33.25 | 34.5 |
| CDY15712 | Canola | nucleus | 33.51 | 34.49 |
| PGSC0003DMT400084734 | Potato | nucleus | 41.56 | 34.41 |
| CDY15713 | Canola | nucleus | 34.81 | 34.36 |
| Solyc05g015510.2.1 | Tomato | nucleus | 41.3 | 34.34 |
| CDY03914 | Canola | nucleus | 32.99 | 34.14 |
| CDY27612 | Canola | nucleus | 29.09 | 34.04 |
| CDY67700 | Canola | nucleus | 30.13 | 33.53 |
| CDX84927 | Canola | nucleus | 31.43 | 32.97 |
| CDY11816 | Canola | nucleus | 30.91 | 32.6 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 29.09 | 32.37 |
| CDY27611 | Canola | nucleus | 30.65 | 32.33 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 38.44 | 32.31 |
| Solyc04g045560.2.1 | Tomato | nucleus | 29.35 | 32.29 |
| Os02t0174100-02 | Rice | nucleus | 21.04 | 32.27 |
| CDX84928 | Canola | nucleus | 30.13 | 31.87 |
| CDY50515 | Canola | nucleus | 12.99 | 31.85 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 34.29 | 31.73 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 28.83 | 31.71 |
| PGSC0003DMT400068752 | Potato | nucleus | 31.69 | 31.69 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 35.32 | 31.41 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 34.81 | 30.59 |
| CDY24113 | Canola | nucleus | 12.73 | 30.43 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 25.71 | 30.18 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 35.58 | 30.18 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 25.45 | 30.15 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 25.45 | 29.97 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 36.1 | 29.64 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 35.58 | 29.53 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.94 | 29.45 |
| Zm00001d014698_P001 | Maize | nucleus | 33.51 | 29.39 |
| OQU77017 | Sorghum | nucleus | 33.51 | 29.32 |
| GSMUA_Achr10P... | Banana | nucleus | 38.18 | 29.17 |
| Os06t0703500-02 | Rice | nucleus | 35.84 | 29.05 |
| CDY25876 | Canola | nucleus | 13.25 | 28.98 |
| Zm00001d015410_P002 | Maize | nucleus | 24.94 | 28.92 |
| CDX79544 | Canola | nucleus | 14.03 | 28.88 |
| Zm00001d053775_P001 | Maize | nucleus | 24.68 | 28.7 |
| EES04495 | Sorghum | nucleus | 35.58 | 28.54 |
| EES04609 | Sorghum | nucleus | 24.94 | 28.49 |
| GSMUA_Achr10P... | Banana | nucleus | 35.84 | 28.34 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 34.55 | 28.12 |
| CDX97645 | Canola | nucleus | 12.99 | 27.93 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 34.29 | 27.91 |
| CDY32310 | Canola | nucleus | 12.73 | 27.84 |
| CDY20128 | Canola | nucleus | 12.73 | 27.84 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 34.03 | 27.58 |
| CDY61210 | Canola | nucleus | 12.73 | 27.37 |
| CDX98540 | Canola | nucleus | 12.73 | 27.37 |
| Os06t0663500-00 | Rice | nucleus | 23.9 | 26.82 |
| CDX98259 | Canola | nucleus | 22.6 | 26.77 |
| CDY61750 | Canola | nucleus | 21.3 | 26.62 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 36.1 | 26.38 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 34.03 | 25.84 |
| Zm00001d053890_P003 | Maize | nucleus | 32.21 | 25.73 |
| CDX67715 | Canola | nucleus | 21.04 | 25.63 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 34.55 | 25.05 |
| CDY45826 | Canola | nucleus | 22.08 | 24.93 |
| CDX79888 | Canola | nucleus | 23.64 | 24.73 |
| CDX95958 | Canola | nucleus | 18.96 | 24.41 |
| CDY47656 | Canola | nucleus | 20.52 | 24.38 |
| CDY53504 | Canola | nucleus | 23.38 | 24.32 |
| CDX84872 | Canola | nucleus | 21.3 | 24.05 |
| CDY06881 | Canola | nucleus | 22.6 | 23.97 |
| CDY14818 | Canola | nucleus | 22.34 | 23.43 |
| CDX90071 | Canola | nucleus | 18.7 | 23.08 |
| CDY34028 | Canola | nucleus | 20.78 | 22.99 |
| CDY50300 | Canola | nucleus | 19.48 | 22.87 |
| CDY69014 | Canola | nucleus | 18.7 | 22.57 |
| CDX71667 | Canola | nucleus | 21.04 | 22.56 |
| CDX96251 | Canola | nucleus | 19.22 | 22.56 |
| CDY15132 | Canola | nucleus | 13.25 | 21.89 |
| CDX81606 | Canola | nucleus | 18.7 | 21.62 |
| CDY38043 | Canola | nucleus | 18.44 | 21.19 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.26 | 1.72 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078I1Y0 | UniProt:A0A078I1Y0 | EnsemblPlants:CDY43604 | ProteinID:CDY43604 |
| ProteinID:CDY43604.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00076919001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EF1504 | SEG:seg | : | : |
Description
BnaC09g17430DBnaC09g17430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1Y0]
Coordinates
chrLK032562:-:125334..128621
Molecular Weight (calculated)
43297.5 Da
IEP (calculated)
8.479
GRAVY (calculated)
-0.716
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MECEWENLIS FGTSSAEIPR KLRPMDWETD EFDCSFPTAA YGSSSGLAHA FSKSSKSTSI SSSSPEARTL NFTSEELGSS EEFAKGINTS PSLELSFGSG
101: DPVLGLKLGK RTYFEDFWEV ENGARGSALP ASLVSSSASP VKRTKSVTQK VQIPRCQVEG CNLDLSSAKD YHRKHRICEN HSKFPKVVVS GVERRFCQQC
201: SRFHCLSEFD EKKRSCRRRL SDHNARRRKP NPERTYEGKQ QMDFVWNRFA LIHTRSEEKF LWPNPKPIPS RGLIQQSAKT RAELLSKEKV TISSSMGASQ
301: DLDGALSLLS NSTSWVPSDQ PTRFSLDHHP TTNLQPMAPR SVTQLSTVSD YWQPDPPAVE GPTDLRRNAV GQFNENYFSL NQFYN
101: DPVLGLKLGK RTYFEDFWEV ENGARGSALP ASLVSSSASP VKRTKSVTQK VQIPRCQVEG CNLDLSSAKD YHRKHRICEN HSKFPKVVVS GVERRFCQQC
201: SRFHCLSEFD EKKRSCRRRL SDHNARRRKP NPERTYEGKQ QMDFVWNRFA LIHTRSEEKF LWPNPKPIPS RGLIQQSAKT RAELLSKEKV TISSSMGASQ
301: DLDGALSLLS NSTSWVPSDQ PTRFSLDHHP TTNLQPMAPR SVTQLSTVSD YWQPDPPAVE GPTDLRRNAV GQFNENYFSL NQFYN
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.