Factsheet for Os06t0663500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0707600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Os03t0707600-01	AT1G14920.1	22942378
AT1G27360.1	Os03t0707600-01	AT2G01570.1	22942378
AT1G27370.1	Os03t0707600-01	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04609	Sorghum	nucleus	52.19	53.12
TraesCS6A01G155300.1	Wheat	nucleus	50.44	52.74
HORVU6Hr1G031450.6	Barley	nucleus	49.85	52.45
TraesCS6D01G145200.1	Wheat	nucleus	49.56	52.31
TraesCS6B01G183400.1	Wheat	nucleus	49.85	52.29
Zm00001d053775_P001	Maize	nucleus	50.15	51.96
Zm00001d015410_P002	Maize	nucleus	50.15	51.81
Os02t0174100-02	Rice	nucleus	35.86	49.0
Os02t0139400-01	Rice	nucleus	21.28	25.89
Solyc04g045560.2.1	Tomato	nucleus	25.95	25.43
GSMUA_Achr5P21990_001	Banana	nucleus	32.07	25.4
VIT_11s0065g00170.t01	Wine grape	nucleus	34.11	25.16
Os07t0505200-01	Rice	nucleus	15.74	25.0
VIT_01s0010g03710.t01	Wine grape	nucleus	34.69	24.95
KRG97402	Soybean	nucleus	31.49	24.94
KRH31506	Soybean	nucleus	32.07	24.83
AT1G27370.1	Thale cress	nucleus	27.99	24.24
CDX84928	Canola	nucleus	25.66	24.18
PGSC0003DMT400068752	Potato	nucleus	27.11	24.16
CDY27611	Canola	nucleus	25.66	24.11
Bra032822.1-P	Field mustard	nucleus	25.66	24.11
CDY03913	Canola	nucleus	25.95	23.99
CDY43604	Canola	nucleus	26.82	23.9
Solyc05g015510.2.1	Tomato	nucleus	32.07	23.76
CDX84927	Canola	nucleus	25.36	23.71
Bra032823.1-P	Field mustard	nucleus	22.45	23.48
PGSC0003DMT400084734	Potato	nucleus	31.78	23.44
CDY67700	Canola	nucleus	23.62	23.41
CDY27612	Canola	nucleus	22.45	23.4
CDY32959	Canola	nucleus	26.53	23.33
Bra027478.1-P	Field mustard	nucleus	26.53	23.33
Bra030041.1-P	Field mustard	nucleus	25.36	23.26
CDY03914	Canola	nucleus	25.07	23.12
Bra033671.1-P	Field mustard	nucleus	24.2	22.93
CDY15713	Canola	nucleus	25.95	22.82
Bra030040.1-P	Field mustard	nucleus	25.95	22.82
CDY15712	Canola	nucleus	24.78	22.73
AT5G43270.1	Thale cress	nucleus	27.41	22.43
AT1G27360.1	Thale cress	nucleus	25.66	22.39
Bra010949.1-P	Field mustard	nucleus	23.62	22.13
Os01t0922600-01	Rice	nucleus	19.83	21.86
CDY11816	Canola	nucleus	23.03	21.64
Os09t0491532-01	Rice	nucleus	19.83	21.05
Os06t0703500-02	Rice	nucleus	28.57	20.63
Os04t0551500-01	Rice	nucleus	20.41	19.44
Os08t0509600-01	Rice	nucleus	23.32	19.18
CDY47812	Canola	nucleus	27.99	18.6
CDY22356	Canola	nucleus	27.99	18.5
Os08t0531600-01	Rice	nucleus	23.32	17.58
Os09t0507100-00	Rice	nucleus	23.32	16.95
Os04t0656500-01	Rice	nucleus	19.83	16.35
Os06t0659100-00	Rice	nucleus	18.08	14.55
Os02t0177300-00	Rice	nucleus	18.66	13.68

Protein Annotations

EntrezGene:107276066	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:BAD45872.1	ProteinID:BAF20206.1	ProteinID:BAS99010.1
ProteinID:EAZ37917.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EnsemblPlantsGene:Os06g0663500	EnsemblPlants:Os06t0663500-00	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF7	UniProt:Q653Z5	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000043A435
RefSeq:XP_015641499.1	SEG:seg	:	:	:	:

Description

RICE SQUAMOSA PROMOTER-BINDING-LIKE 11SBP domain containing protein. (Os06t0663500-00)

Coordinates

chr6:-:27387616..27391161

Molecular Weight (calculated)

37346.2 Da

IEP (calculated)

7.744

GRAVY (calculated)

-0.641

Length

343 amino acids

Sequence
(BLAST)

001: MECNPVSSTT SSSLLWDWDA TASAEPPPPP GKRGGRDSSS ASASAKRGRS AAAAGDAAAV AAEAPRCQVE GCGLELGGYK EYYRKHRVCE PHTKCLRVVV
101: AGQDRRFCQQ CSRFHAPSEF DQEKRSCRRR LSDHNARRRK PQTDVFAFGS GTLPRSLFDD RQQISFAWDN NAPLNHANTT SSSSWTSDLQ LSQVMDISKR
201: SRKAGADSAN IRLSNALPTL CHDTNELLPI KGADASETAS KLDGALDVQR ALSLLSASSR GLTDPGHQTS SIIQFTNSNQ NSTLPSVPSE GNSNVPFWVD
301: GQHQAVEPQV FQFTMDTGNT VFPDLERIKP SYESSMFGLN QIH

Best Arabidopsis Sequence Match ( AT1G27360.4 )
(BLAST)

001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK

Arabidopsis Description

SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.