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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G27360.1 TraesCS4A01G271000.1 AT1G14920.1 22942378
AT1G27360.1 TraesCS4A01G466700.1 AT1G14920.1 22942378
AT1G27360.1 TraesCS4B01G043100.1 AT1G14920.1 22942378
AT1G27360.1 TraesCS4D01G040400.1 AT1G14920.1 22942378
AT1G27360.1 TraesCS4A01G271000.1 AT2G01570.1 22942378
AT1G27360.1 TraesCS4A01G466700.1 AT2G01570.1 22942378
AT1G27360.1 TraesCS4B01G043100.1 AT2G01570.1 22942378
AT1G27360.1 TraesCS4D01G040400.1 AT2G01570.1 22942378
AT1G27370.1 TraesCS4A01G271000.1 AT1G14920.1 22942378
AT1G27370.1 TraesCS4A01G466700.1 AT1G14920.1 22942378
AT1G27370.1 TraesCS4B01G043100.1 AT1G14920.1 22942378
AT1G27370.1 TraesCS4D01G040400.1 AT1G14920.1 22942378
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G155300.1 Wheat nucleus 98.46 97.56
TraesCS6B01G183400.1 Wheat nucleus 97.23 96.64
HORVU6Hr1G031450.6 Barley nucleus 95.08 94.79
EES04609 Sorghum nucleus 71.69 69.14
Zm00001d053775_P001 Maize nucleus 68.62 67.37
Zm00001d015410_P002 Maize nucleus 67.08 65.66
Os06t0663500-00 Rice nucleus 52.31 49.56
TraesCS2D01G232800.1 Wheat nucleus 18.77 31.77
KRG97402 Soybean nucleus 38.77 29.1
KRH31506 Soybean nucleus 38.77 28.44
VIT_01s0010g03710.t01 Wine grape nucleus 41.23 28.09
GSMUA_Achr5P21990_001 Banana nucleus 36.92 27.71
VIT_11s0065g00170.t01 Wine grape nucleus 39.38 27.53
Solyc04g045560.2.1 Tomato nucleus 29.54 27.43
PGSC0003DMT400068752 Potato nucleus 32.0 27.01
Bra033671.1-P Field mustard nucleus 29.85 26.8
TraesCS6D01G098500.1 Wheat nucleus 38.15 26.22
Solyc05g015510.2.1 Tomato nucleus 36.92 25.92
PGSC0003DMT400084734 Potato nucleus 36.62 25.59
CDX84928 Canola nucleus 28.62 25.55
CDY27611 Canola nucleus 28.62 25.48
Bra032822.1-P Field mustard nucleus 28.62 25.48
CDY43604 Canola nucleus 30.15 25.45
Bra027478.1-P Field mustard nucleus 30.46 25.38
CDY32959 Canola nucleus 30.46 25.38
Bra032823.1-P Field mustard nucleus 25.54 25.3
AT5G43270.1 Thale cress nucleus 32.62 25.3
CDY27612 Canola nucleus 25.54 25.23
CDY03913 Canola nucleus 28.62 25.07
CDX84927 Canola nucleus 27.69 24.52
CDY03914 Canola nucleus 28.0 24.46
Bra030040.1-P Field mustard nucleus 29.23 24.36
Bra030041.1-P Field mustard nucleus 28.0 24.33
CDY15713 Canola nucleus 28.92 24.1
CDY15712 Canola nucleus 27.69 24.06
CDY67700 Canola nucleus 25.54 23.99
AT1G27370.1 Thale cress nucleus 28.92 23.74
AT1G27360.1 Thale cress nucleus 28.0 23.16
Bra010949.1-P Field mustard nucleus 25.85 22.95
CDY11816 Canola nucleus 25.54 22.74
TraesCS2D01G410700.1 Wheat nucleus 24.31 22.25
TraesCS7D01G482300.1 Wheat nucleus 20.62 21.14
TraesCS7D01G261500.1 Wheat nucleus 26.77 21.01
CDY22356 Canola nucleus 33.54 21.0
TraesCS5D01G294400.1 Wheat nucleus 27.38 20.6
CDY47812 Canola nucleus 32.62 20.54
TraesCS5D01G273900.2 Wheat nucleus 25.54 20.34
TraesCS3D01G425800.1 Wheat nucleus 26.15 20.29
TraesCS7D01G245200.2 Wheat nucleus 24.0 20.26
TraesCS2D01G502900.2 Wheat nucleus 24.31 19.41
TraesCS7D01G482400.1 Wheat nucleus 21.85 18.3
TraesCS7D01G482500.1 Wheat nucleus 20.92 16.35
TraesCS7D01G482200.1 Wheat nucleus 20.0 15.93
TraesCS6D01G142100.1 Wheat nucleus 20.92 15.04
TraesCS4D01G332700.1 Wheat nucleus 4.92 7.31
Protein Annotations
EnsemblPlants:TraesCS6D01G145200.1EnsemblPlantsGene:TraesCS6D01G145200Gene3D:4.10.1100.10GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634InterPro:IPR004333
InterPro:IPR036893InterPro:SBP_domInterPro:SBP_sfPANTHER:PTHR31251PANTHER:PTHR31251:SF7PFAM:PF03110
PFscan:PS51141SEG:segSUPFAM:SSF103612MapMan:15.5.18::
Description
No Description!
Coordinates
chr6D:-:115545832..115549930
Molecular Weight (calculated)
35192.4 Da
IEP (calculated)
9.258
GRAVY (calculated)
-0.639
Length
325 amino acids
Sequence
(BLAST)
001: MEWTAPKSTP LSPPHLLWDW GDAAAPGSSG EAAGRRGKEK RARGEGAGGG GGGGGGVRCQ VEGCGVELRD AKEYHRKHRV CEAHTKFPRV VVAGQERRFC
101: QQCSRFHALS EFDQKKRSCR RRLSDHNARR RKPQPDAFSF APARLPSSLM FDDRRQISFV WNKDPSHARP FPCSPWDSPS DFKLPQVKEI REVSINGQVH
201: FDKSHLPNAV PALSHDIAEL LPMKGPDASV TASKLGGAPD LQHALSLLSA SSCGLPDPVQ QASCLVQFTG ASQNSRGPSP HGGSPPSASC AEGQPMVPSP
301: QFVRFTMDGA SSGYESTFFG VNRMN
Best Arabidopsis Sequence Match ( AT1G27360.4 )
(BLAST)
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
Arabidopsis Description
SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.