Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G180300.1 | Wheat | nucleus | 94.91 | 97.06 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 95.8 | 96.65 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 81.86 | 75.36 |
| TraesCS7D01G482300.1 | Wheat | nucleus | 38.05 | 54.26 |
| Zm00001d015451_P001 | Maize | nucleus | 52.88 | 54.2 |
| OQU84482 | Sorghum | nucleus | 53.32 | 54.16 |
| TraesCS7D01G482400.1 | Wheat | nucleus | 43.81 | 51.03 |
| Os02t0177300-00 | Rice | nucleus | 52.43 | 50.64 |
| TraesCS7D01G482500.1 | Wheat | nucleus | 45.13 | 49.04 |
| Zm00001d053756_P001 | Maize | nucleus | 42.48 | 47.29 |
| TraesCS7D01G482200.1 | Wheat | nucleus | 39.6 | 43.87 |
| Bra032662.1-P | Field mustard | nucleus | 15.04 | 43.04 |
| TraesCS2D01G232800.1 | Wheat | nucleus | 15.93 | 37.5 |
| GSMUA_Achr10P... | Banana | nucleus | 18.58 | 36.84 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 21.46 | 35.66 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 19.91 | 35.29 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 20.8 | 34.31 |
| CDX90071 | Canola | nucleus | 23.01 | 33.33 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.35 | 33.22 |
| Bra033221.1-P | Field mustard | nucleus | 23.89 | 32.93 |
| CDY15132 | Canola | nucleus | 16.59 | 32.19 |
| PGSC0003DMT400074976 | Potato | nucleus | 20.8 | 32.08 |
| KRH48747 | Soybean | nucleus | 23.89 | 31.95 |
| KRH66611 | Soybean | nucleus | 23.67 | 31.85 |
| Solyc10g018780.1.1 | Tomato | nucleus | 20.58 | 31.74 |
| AT1G02065.1 | Thale cress | nucleus | 23.01 | 31.23 |
| PGSC0003DMT400066955 | Potato | nucleus | 20.8 | 31.13 |
| KRH07602 | Soybean | nucleus | 14.82 | 31.02 |
| KRH75288 | Soybean | nucleus | 19.47 | 30.66 |
| Solyc01g090730.2.1 | Tomato | nucleus | 20.13 | 30.43 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.23 | 29.66 |
| CDY38043 | Canola | nucleus | 21.9 | 29.55 |
| TraesCS2D01G502900.2 | Wheat | nucleus | 22.57 | 25.06 |
| TraesCS2D01G410700.1 | Wheat | nucleus | 17.26 | 21.97 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 15.04 | 20.92 |
| TraesCS7D01G261500.1 | Wheat | nucleus | 18.58 | 20.29 |
| TraesCS5D01G294400.1 | Wheat | nucleus | 18.81 | 19.68 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 16.59 | 19.48 |
| TraesCS3D01G425800.1 | Wheat | nucleus | 17.92 | 19.33 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 17.26 | 19.12 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 18.81 | 17.97 |
| TraesCS4D01G332700.1 | Wheat | nucleus | 4.2 | 8.68 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G142100.1 | EnsemblPlantsGene:TraesCS6D01G142100 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr6D:-:111567638..111570051
Molecular Weight (calculated)
48865.1 Da
IEP (calculated)
7.603
GRAVY (calculated)
-0.659
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSRLSGGT MAPVSDMTDF GYAPMQSYPN FEPAGMVMPG DRQPPFQHHH LYDSLDFNAA AFSFQDPVAL FSSGSAFSNQ LQQPFLQTQV SMPTMASSSL
101: LQAPMMTLPG MLTSSSASPV DAYTFGGGGS AGFLKREEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRFGG AGAMGMLGLG LGAAAHQHQT
201: PRCQAEGCKA DLSAAKHYHR RHKVCEYHAK AATVAASGKQ QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPAGA QGKDSPPPSK KADASITSSY
301: TGDHRTNKST TGAAFSPSAS GFSCLQQQQQ QQQHEIDNGG QSSNATPTNL SLAAPPPPPP PQDDAGFGAG LDTMLLIQQQ GPDEQEDEQQ QQQHFMMTSL
401: VQSHRQQQQQ GDRGNILSCS TTSPSDQRRH QNDGDSCCNG NSMQHFFEVE FM
101: LQAPMMTLPG MLTSSSASPV DAYTFGGGGS AGFLKREEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRFGG AGAMGMLGLG LGAAAHQHQT
201: PRCQAEGCKA DLSAAKHYHR RHKVCEYHAK AATVAASGKQ QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPAGA QGKDSPPPSK KADASITSSY
301: TGDHRTNKST TGAAFSPSAS GFSCLQQQQQ QQQHEIDNGG QSSNATPTNL SLAAPPPPPP PQDDAGFGAG LDTMLLIQQQ GPDEQEDEQQ QQQHFMMTSL
401: VQSHRQQQQQ GDRGNILSCS TTSPSDQRRH QNDGDSCCNG NSMQHFFEVE FM
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.