Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G180300.1 | Wheat | nucleus | 73.93 | 82.13 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 74.75 | 81.92 |
| TraesCS6D01G142100.1 | Wheat | nucleus | 75.36 | 81.86 |
| OQU84482 | Sorghum | nucleus | 47.66 | 52.58 |
| Zm00001d015451_P001 | Maize | nucleus | 46.84 | 52.15 |
| Os02t0177300-00 | Rice | nucleus | 47.45 | 49.79 |
| Zm00001d053756_P001 | Maize | nucleus | 38.09 | 46.06 |
| HORVU7Hr1G110980.3 | Barley | nucleus, plastid | 41.34 | 45.21 |
| Bra032662.1-P | Field mustard | nucleus | 13.85 | 43.04 |
| GSMUA_Achr10P... | Banana | nucleus | 16.9 | 36.4 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 17.92 | 34.51 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 18.94 | 34.19 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 18.94 | 33.94 |
| CDX90071 | Canola | nucleus | 20.98 | 33.01 |
| HORVU2Hr1G097610.1 | Barley | nucleus | 13.65 | 33.0 |
| Bra033221.1-P | Field mustard | nucleus | 21.79 | 32.62 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 19.96 | 32.24 |
| HORVU2Hr1G097580.1 | Barley | nucleus | 13.65 | 32.06 |
| PGSC0003DMT400074976 | Potato | nucleus | 18.74 | 31.4 |
| CDY15132 | Canola | nucleus | 14.87 | 31.33 |
| Solyc10g018780.1.1 | Tomato | nucleus | 18.53 | 31.06 |
| KRH66611 | Soybean | nucleus | 21.18 | 30.95 |
| KRH48747 | Soybean | nucleus | 20.98 | 30.47 |
| PGSC0003DMT400066955 | Potato | nucleus | 18.53 | 30.13 |
| AT1G02065.1 | Thale cress | nucleus | 20.37 | 30.03 |
| KRH75288 | Soybean | nucleus | 17.52 | 29.97 |
| CDY38043 | Canola | nucleus | 20.37 | 29.85 |
| HORVU2Hr1G048280.2 | Barley | plastid | 11.81 | 29.74 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 21.38 | 29.66 |
| Solyc01g090730.2.1 | Tomato | nucleus | 17.92 | 29.43 |
| KRH07602 | Soybean | nucleus | 12.83 | 29.17 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 14.26 | 21.47 |
| HORVU0Hr1G039170.6 | Barley | nucleus | 16.7 | 20.5 |
| HORVU3Hr1G094730.2 | Barley | nucleus | 16.09 | 18.41 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 14.66 | 18.37 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 15.48 | 18.27 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 16.9 | 16.37 |
| HORVU2Hr1G111620.1 | Barley | cytosol, nucleus | 1.43 | 10.94 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | UniProt:A0A287TS59 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU6Hr1G030490 | EnsemblPlants:HORVU6Hr1G030490.2 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 |
| PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI000B46FA7D |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:127986534..127990109
Molecular Weight (calculated)
52967.9 Da
IEP (calculated)
8.392
GRAVY (calculated)
-0.594
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: SRHAQAQPFC AAKIHTHPAS CFLTHQSGRA SPTFLIRARD SRPMMSSRLN VGTMAPVSDV VDFGYAPIQS YPNFESAGLA LPGDRQPPFQ HHHLYDSFDF
101: TSANFSFQDP AALFSGDSAL SNQLQQPFVQ SQVTMPTTAS SSVLQMPMMT LPGMLMSSSS SLAADACTFG GGGGFLKRED GGPFSDIGGG GRIGLNLGRR
201: TYFSPADVLA VDRLLMRSRF GGAGPMGMLG LGLGAAAHHH QPPRCQAEGC KTDLSAAKHY HRRHKVCEYH AKAATVAASG KQQRFCQQCS RYVVLAEFDE
301: AKRSCRKRLT EHNRRRRKPA GAQAGKDSPA PPTKKPDGSI TSSYTGDHRT NKSTTAAAFS PSASSFSCFQ QQQHALDNGG QSNNATPTSA PPTLSLAAPP
401: SPPQQNDGDF GSGLDTMLQM QPQEADEQGE QQQHLMMTSL VQSQRQQQHR DSGNILSCST TSASDQRHHH NNGGSCCNDN SMQHFFEVDF M
101: TSANFSFQDP AALFSGDSAL SNQLQQPFVQ SQVTMPTTAS SSVLQMPMMT LPGMLMSSSS SLAADACTFG GGGGFLKRED GGPFSDIGGG GRIGLNLGRR
201: TYFSPADVLA VDRLLMRSRF GGAGPMGMLG LGLGAAAHHH QPPRCQAEGC KTDLSAAKHY HRRHKVCEYH AKAATVAASG KQQRFCQQCS RYVVLAEFDE
301: AKRSCRKRLT EHNRRRRKPA GAQAGKDSPA PPTKKPDGSI TSSYTGDHRT NKSTTAAAFS PSASSFSCFQ QQQHALDNGG QSNNATPTSA PPTLSLAAPP
401: SPPQQNDGDF GSGLDTMLQM QPQEADEQGE QQQHLMMTSL VQSQRQQQHR DSGNILSCST TSASDQRHHH NNGGSCCNDN SMQHFFEVDF M
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.