Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84482 | Sorghum | nucleus | 83.67 | 82.92 |
| Zm00001d053756_P001 | Maize | nucleus | 64.85 | 70.44 |
| Os02t0177300-00 | Rice | nucleus | 58.05 | 54.7 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 53.51 | 53.39 |
| TraesCS6D01G142100.1 | Wheat | nucleus | 54.2 | 52.88 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 53.29 | 52.46 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 52.15 | 46.84 |
| Zm00001d046906_P001 | Maize | nucleus | 44.9 | 46.7 |
| Zm00001d036692_P001 | Maize | nucleus | 44.9 | 45.62 |
| Bra032662.1-P | Field mustard | nucleus | 15.65 | 43.67 |
| GSMUA_Achr10P... | Banana | nucleus | 19.27 | 37.28 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 21.09 | 36.47 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 21.09 | 33.94 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 20.86 | 33.82 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.22 | 32.24 |
| PGSC0003DMT400074976 | Potato | nucleus | 21.32 | 32.08 |
| Solyc10g018780.1.1 | Tomato | nucleus | 21.09 | 31.74 |
| CDX90071 | Canola | nucleus | 22.22 | 31.41 |
| Solyc01g090730.2.1 | Tomato | nucleus | 21.09 | 31.1 |
| Bra033221.1-P | Field mustard | nucleus | 23.13 | 31.1 |
| PGSC0003DMT400066955 | Potato | nucleus | 21.09 | 30.79 |
| KRH66611 | Soybean | nucleus | 23.13 | 30.36 |
| CDY15132 | Canola | nucleus | 15.87 | 30.04 |
| KRH48747 | Soybean | nucleus | 22.9 | 29.88 |
| KRH75288 | Soybean | nucleus | 19.27 | 29.62 |
| AT1G02065.1 | Thale cress | nucleus | 22.22 | 29.43 |
| CDY38043 | Canola | nucleus | 22.22 | 29.25 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.13 | 28.81 |
| KRH07602 | Soybean | nucleus | 13.83 | 28.24 |
| Zm00001d021573_P001 | Maize | mitochondrion | 12.93 | 27.67 |
| Zm00001d006451_P001 | Maize | mitochondrion | 14.51 | 25.2 |
| Zm00001d026491_P001 | Maize | nucleus | 21.54 | 23.99 |
| Zm00001d002005_P001 | Maize | nucleus | 21.32 | 23.56 |
| Zm00001d012015_P001 | Maize | nucleus | 18.59 | 21.87 |
| Zm00001d006091_P001 | Maize | nucleus | 20.41 | 21.28 |
| Zm00001d015410_P002 | Maize | nucleus | 15.87 | 21.08 |
| Zm00001d053775_P001 | Maize | nucleus | 15.65 | 20.85 |
| Zm00001d006028_P001 | Maize | nucleus | 17.91 | 20.63 |
| Zm00001d021056_P001 | Maize | nucleus | 20.86 | 19.78 |
| Zm00001d049824_P002 | Maize | nucleus | 19.5 | 19.77 |
| Zm00001d049822_P001 | Maize | nucleus | 19.27 | 19.68 |
| Zm00001d042319_P001 | Maize | nucleus | 18.14 | 19.56 |
| Zm00001d020941_P001 | Maize | nucleus | 16.55 | 19.31 |
| Zm00001d026175_P001 | Maize | nucleus | 17.23 | 19.05 |
| Zm00001d031451_P001 | Maize | nucleus | 17.01 | 18.61 |
| Zm00001d052890_P001 | Maize | nucleus | 17.01 | 18.38 |
| Zm00001d014698_P001 | Maize | nucleus | 17.69 | 17.77 |
| Zm00001d053890_P003 | Maize | nucleus | 16.33 | 14.94 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 17.01 | 14.12 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | ProteinID:AQK68957.1 | UniProt:B6TPH6 | EMBL:EU966891 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | EMBL:KJ728009 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI000182E1EC | EnsemblPlantsGene:Zm00001d015451 | EnsemblPlants:Zm00001d015451_P001 | EnsemblPlants:Zm00001d015451_T001 | SEG:seg | : |
Description
SBP-domain protein1 SBP-domain protein1
Coordinates
chr5:+:91106167..91109100
Molecular Weight (calculated)
46075.3 Da
IEP (calculated)
7.170
GRAVY (calculated)
-0.329
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMNTNAMSP TASTDADFSF GPLQPYVGFD VAGMGMPSVV VERSSSLLQH NTSSSSHNNN LGLYDSFDFA AAAGLPFQES GLLPPASLPL APSPQSMAAM
101: AMPPSSLLLT LPGVPAAADV VYNPFGGGGA GGFLKREDGG PLVDAAGGGG RIGLNLGRRT YFSPADVLAV DRLLTRSRLA GGGVGVGLGM GLGMGVLGLG
201: AAHHQQPPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAS AVAAAGKQQR FCQQCSRFHV LAEFDEAKRS CRKRLTEHNR RRRKPSSAQD EDSSPPPPKK
301: LDTCITNTAS YNDDLKTGAS NTAAAAISPN GSGVSCLDVM DNGQTSSAAA PTALSLAAPP PPPLHEKDGS LDSMLMQRVL QGRREDDDDE QRRHFITSLV
401: MQTTQQQHSG GGGAGNILSC SSVSDQHNGG GCNGFFEVDF I
101: AMPPSSLLLT LPGVPAAADV VYNPFGGGGA GGFLKREDGG PLVDAAGGGG RIGLNLGRRT YFSPADVLAV DRLLTRSRLA GGGVGVGLGM GLGMGVLGLG
201: AAHHQQPPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAS AVAAAGKQQR FCQQCSRFHV LAEFDEAKRS CRKRLTEHNR RRRKPSSAQD EDSSPPPPKK
301: LDTCITNTAS YNDDLKTGAS NTAAAAISPN GSGVSCLDVM DNGQTSSAAA PTALSLAAPP PPPLHEKDGS LDSMLMQRVL QGRREDDDDE QRRHFITSLV
401: MQTTQQQHSG GGGAGNILSC SSVSDQHNGG GCNGFFEVDF I
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.