Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G142100.1 | Wheat | nucleus | 96.65 | 95.8 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 93.75 | 95.02 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 81.92 | 74.75 |
| OQU84482 | Sorghum | nucleus | 53.35 | 53.71 |
| Zm00001d015451_P001 | Maize | nucleus | 52.46 | 53.29 |
| Os02t0177300-00 | Rice | nucleus | 52.23 | 50.0 |
| TraesCS7A01G495000.1 | Wheat | nucleus | 44.42 | 49.01 |
| TraesCS7A01G495100.1 | Wheat | nucleus | 44.87 | 47.97 |
| TraesCS7A01G494900.1 | Wheat | nucleus | 41.96 | 47.72 |
| Zm00001d053756_P001 | Maize | nucleus | 43.08 | 47.54 |
| TraesCS7A01G494800.1 | Wheat | nucleus | 38.39 | 43.11 |
| Bra032662.1-P | Field mustard | nucleus | 15.18 | 43.04 |
| TraesCS2A01G232400.1 | Wheat | nucleus | 15.85 | 36.98 |
| GSMUA_Achr10P... | Banana | nucleus | 18.53 | 36.4 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 21.65 | 35.66 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 19.87 | 34.9 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 21.21 | 34.67 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.54 | 33.22 |
| CDX90071 | Canola | nucleus | 22.77 | 32.69 |
| Bra033221.1-P | Field mustard | nucleus | 23.66 | 32.32 |
| PGSC0003DMT400074976 | Potato | nucleus | 20.76 | 31.74 |
| Solyc10g018780.1.1 | Tomato | nucleus | 20.54 | 31.4 |
| KRH48747 | Soybean | nucleus | 23.66 | 31.36 |
| CDY15132 | Canola | nucleus | 16.29 | 31.33 |
| KRH66611 | Soybean | nucleus | 23.44 | 31.25 |
| AT1G02065.1 | Thale cress | nucleus | 22.77 | 30.63 |
| PGSC0003DMT400066955 | Potato | nucleus | 20.54 | 30.46 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.88 | 30.23 |
| Solyc01g090730.2.1 | Tomato | nucleus | 20.09 | 30.1 |
| KRH07602 | Soybean | nucleus | 14.51 | 30.09 |
| KRH75288 | Soybean | nucleus | 19.2 | 29.97 |
| CDY38043 | Canola | nucleus | 21.65 | 28.96 |
| TraesCS2A01G502300.1 | Wheat | nucleus | 22.32 | 24.27 |
| TraesCS2A01G413900.1 | Wheat | nucleus | 17.86 | 22.92 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 15.18 | 20.73 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 19.64 | 20.18 |
| TraesCS7A01G260500.1 | Wheat | nucleus | 18.3 | 20.15 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 16.96 | 19.69 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 18.08 | 19.52 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 17.63 | 19.22 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 19.42 | 18.32 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G152000.1 | EnsemblPlantsGene:TraesCS6A01G152000 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr6A:+:136541506..136544204
Molecular Weight (calculated)
48095.2 Da
IEP (calculated)
7.023
GRAVY (calculated)
-0.608
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSRLSGGT MAPVSDMADF GCAPMQSYPN FEPAGMVMPG DRQPPFQHHH LYDSLDFNAA AFSFQDPVAL FSSGSAFSNQ LQQPFLQTQV TTPTMASSSL
101: LQAPMMTLPG MLTSSSASPV DACTFGGGGS AGFLKQEEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRFGG AGAMGMLGLG LGAAAHHHQT
201: PRCQAEGCKA DLSAAKHYHR RHKVCEYHAK ATTVAASGKQ QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPAGA QGKDSPPPSK KADASITSSY
301: TGDHKTNKST TGAAFSPSAG GFSCLQQQQQ QHEIDNGGQS SNATPTNLSL AAPPPPPPPQ DDAGFGAGLD TMLLIQQQGP DEQEEEEEQH FMMTSLVQSH
401: RQQQQHGDSG NILSCSTTSP SDQRRHQNDG DSCCNGNSMQ HFFEVEFM
101: LQAPMMTLPG MLTSSSASPV DACTFGGGGS AGFLKQEEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRFGG AGAMGMLGLG LGAAAHHHQT
201: PRCQAEGCKA DLSAAKHYHR RHKVCEYHAK ATTVAASGKQ QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPAGA QGKDSPPPSK KADASITSSY
301: TGDHKTNKST TGAAFSPSAG GFSCLQQQQQ QHEIDNGGQS SNATPTNLSL AAPPPPPPPQ DDAGFGAGLD TMLLIQQQGP DEQEEEEEQH FMMTSLVQSH
401: RQQQQHGDSG NILSCSTTSP SDQRRHQNDG DSCCNGNSMQ HFFEVEFM
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.