Factsheet for TraesCS5A01G286700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G294400.1	Wheat	nucleus	97.02	97.92
TraesCS5B01G286000.1	Wheat	nucleus	97.02	97.69
HORVU5Hr1G076380.9	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	67.2	74.74
Zm00001d006091_P001	Maize	nucleus	66.51	68.56
EER97011	Sorghum	nucleus	71.79	67.46
Zm00001d021056_P001	Maize	nucleus	70.64	66.24
Os09t0507100-00	Rice	nucleus	70.64	65.25
TraesCS7A01G260500.1	Wheat	nucleus	58.26	62.41
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	35.55	48.59
GSMUA_AchrUn_...	Banana	nucleus	39.22	48.44
GSMUA_AchrUn_...	Banana	nucleus	41.05	48.12
GSMUA_AchrUn_...	Banana	nucleus	38.53	48.0
GSMUA_Achr5P25090_001	Banana	nucleus	40.83	43.1
GSMUA_Achr11P...	Banana	nucleus	38.53	40.48
GSMUA_Achr4P16050_001	Banana	nucleus	33.26	40.28
VIT_14s0068g01780.t01	Wine grape	nucleus	30.73	35.45
TraesCS2A01G232400.1	Wheat	nucleus	15.14	34.38
TraesCS3A01G432500.1	Wheat	nucleus	32.57	34.22
KRG94562	Soybean	nucleus	28.44	33.97
KRH06918	Soybean	nucleus	28.44	33.97
TraesCS6A01G155300.1	Wheat	nucleus	20.87	27.74
TraesCS2A01G413900.1	Wheat	nucleus	19.5	24.36
TraesCS2A01G502300.1	Wheat	nucleus	20.87	22.09
TraesCS7A01G246500.1	Wheat	nucleus	19.27	21.76
TraesCS7A01G495100.1	Wheat	nucleus	20.64	21.48
TraesCS7A01G495000.1	Wheat	nucleus	19.95	21.43
TraesCS7A01G494900.1	Wheat	nucleus	19.27	21.32
TraesCS7A01G494800.1	Wheat	nucleus	19.5	21.3
TraesCS5A01G265900.2	Wheat	nucleus	19.95	21.17
TraesCS6A01G110100.2	Wheat	nucleus	22.48	20.63
TraesCS6A01G152000.1	Wheat	nucleus	20.18	19.64
CDX80286	Canola	cytosol, nucleus, plasma membrane	1.15	8.62

Protein Annotations

EnsemblPlants:TraesCS5A01G286700.2	EnsemblPlantsGene:TraesCS5A01G286700	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR004333
InterPro:IPR036893	InterPro:SBP_dom	InterPro:SBP_sf	PANTHER:PTHR31251	PANTHER:PTHR31251:SF33	PFAM:PF03110
PFscan:PS51141	SEG:seg	SUPFAM:SSF103612	MapMan:15.5.18	:	:

Description

No Description!

Coordinates

chr5A:+:494570130..494575738

Molecular Weight (calculated)

45531.1 Da

IEP (calculated)

7.294

GRAVY (calculated)

-0.391

Length

436 amino acids

Sequence
(BLAST)

001: MDWDLKMPGS WDLAELEHDG VPAMAAPAAA GIAAAAARGP PGRPECSVDL KLGGLGEFGP AADGAMKQQQ PPVATAAANG PSASLSASAS NAAAVVPSAS
101: PLKRPRPGAG GGGGAGAGHC PSCAVDGCKA DLSKCRDYHR RHKVCEAHSK TPLVVVAGRE MRFCQQCSRF HLLAEFDEAK RSCRKRLDGH NRRRRKPQVD
201: SMTSGSFMTT QQGLYSNAGT RFASFSAPRP ESSWSGIIKS EDSNPYYTTT HQINFAGSSS SYSKEGRRFP FLHEGDQMSF STGAAALEIP PVCQPLLKAV
301: APPPPPPESS SSNKMFSDGQ LTHMLDSDCA LSLLSSPANS SSVDVSRMVR PSEHIPSVPN LQQFGSSSWF ACSQASSAAT GFAAFAGGMD GEQQLNAGGA
401: LVPSSNDNEM NCHGIFHVGA DGSSEGTSPS LPFSWQ

Best Arabidopsis Sequence Match ( AT5G50570.1 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.