Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G482300.1 | Wheat | nucleus | 69.04 | 85.8 |
| TraesCS7A01G495000.1 | Wheat | nucleus | 88.32 | 85.71 |
| TraesCS7B01G402400.1 | Wheat | nucleus | 79.95 | 78.55 |
| TraesCS7A01G495100.1 | Wheat | nucleus | 83.25 | 78.28 |
| HORVU7Hr1G110980.3 | Barley | nucleus, plastid | 84.52 | 74.16 |
| TraesCS7A01G494800.1 | Wheat | nucleus | 73.6 | 72.68 |
| Zm00001d046906_P001 | Maize | nucleus | 64.72 | 60.14 |
| Os06t0659100-00 | Rice | nucleus | 64.97 | 60.09 |
| EER88765 | Sorghum | nucleus | 66.75 | 59.23 |
| Zm00001d036692_P001 | Maize | nucleus | 62.94 | 57.14 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 47.72 | 41.96 |
| Bra032662.1-P | Field mustard | nucleus | 16.24 | 40.51 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 24.62 | 35.66 |
| TraesCS2A01G232400.1 | Wheat | nucleus | 17.26 | 35.42 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 22.84 | 35.29 |
| GSMUA_Achr10P... | Banana | nucleus | 19.54 | 33.77 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 23.35 | 33.58 |
| KRH75288 | Soybean | nucleus | 22.34 | 30.66 |
| PGSC0003DMT400074976 | Potato | nucleus | 22.34 | 30.03 |
| Solyc10g018780.1.1 | Tomato | nucleus | 22.08 | 29.69 |
| PGSC0003DMT400066955 | Potato | nucleus | 22.59 | 29.47 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.59 | 29.28 |
| KRH66611 | Soybean | nucleus | 24.87 | 29.17 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 26.14 | 29.1 |
| KRH48747 | Soybean | nucleus | 24.87 | 28.99 |
| Solyc01g090730.2.1 | Tomato | nucleus | 21.83 | 28.76 |
| AT1G02065.1 | Thale cress | nucleus | 23.6 | 27.93 |
| CDX90071 | Canola | nucleus | 22.08 | 27.88 |
| Bra033221.1-P | Field mustard | nucleus | 22.84 | 27.44 |
| CDY38043 | Canola | nucleus | 23.1 | 27.16 |
| CDY15132 | Canola | nucleus | 15.23 | 25.75 |
| TraesCS2A01G502300.1 | Wheat | nucleus | 26.9 | 25.73 |
| KRH07602 | Soybean | nucleus | 13.96 | 25.46 |
| TraesCS2A01G413900.1 | Wheat | nucleus | 19.54 | 22.06 |
| TraesCS7A01G260500.1 | Wheat | nucleus | 21.32 | 20.64 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 21.32 | 20.44 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 17.01 | 20.43 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 19.8 | 20.21 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 21.32 | 19.27 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 20.05 | 19.04 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 19.8 | 16.42 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G494900.1 | EnsemblPlantsGene:TraesCS7A01G494900 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | ncoils:Coil | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF34 |
| PFAM:PF03110 | PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : |
Description
No Description!
Coordinates
chr7A:+:685090147..685095837
Molecular Weight (calculated)
42658.5 Da
IEP (calculated)
9.120
GRAVY (calculated)
-0.578
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGGRMNAA ASDDFPFAAM QQPPYVGLEH AGGGGGGQRN QGAMMYDNFD FAAAAAEFGQ FQDAPHHQML ALPLNGNGAG GLVPMAPPPM PGMQLQMPPM
101: PHGMHSHGDV YSAMGMVKRE GGAGDAGRIG LNLGRRTYFS PGDMMAVDRM LMRSRLGGVF GLGFGRAHHQ APRCQVQDCK ADLSGAKHYH RRHKVCEYHA
201: KAALVSAAGK QQRFCQQCSR FHVLTEFDEA KRSCRRRLAE HNRRRRKPAA SSTMAASKDS ASPSDNNTLS TTKSTISSNT SAISCLQQGQ AREVAATRPT
301: ALTLGATPEK DDHQQQIRNA MQLHHHQEQQ HFINSLLQNN IRNSNILSCS SVSSSTVPLA VAANGEVSDQ NNDNKNNVSN NVNSGMHMFE VDFM
101: PHGMHSHGDV YSAMGMVKRE GGAGDAGRIG LNLGRRTYFS PGDMMAVDRM LMRSRLGGVF GLGFGRAHHQ APRCQVQDCK ADLSGAKHYH RRHKVCEYHA
201: KAALVSAAGK QQRFCQQCSR FHVLTEFDEA KRSCRRRLAE HNRRRRKPAA SSTMAASKDS ASPSDNNTLS TTKSTISSNT SAISCLQQGQ AREVAATRPT
301: ALTLGATPEK DDHQQQIRNA MQLHHHQEQQ HFINSLLQNN IRNSNILSCS SVSSSTVPLA VAANGEVSDQ NNDNKNNVSN NVNSGMHMFE VDFM
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.