Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G265600.2 | Wheat | nucleus | 93.43 | 96.97 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 95.86 | 96.57 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 88.32 | 87.26 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 54.01 | 57.51 |
| TraesCS2A01G232400.1 | Wheat | nucleus | 16.06 | 34.38 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 31.63 | 34.3 |
| KRG95361 | Soybean | nucleus | 28.95 | 33.15 |
| KRH67040 | Soybean | nucleus | 29.44 | 32.97 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.71 | 32.93 |
| KRH71914 | Soybean | nucleus, plastid | 28.47 | 32.68 |
| PGSC0003DMT400029751 | Potato | nucleus | 29.44 | 32.53 |
| Solyc10g078700.1.1 | Tomato | nucleus | 29.44 | 32.53 |
| KRH38141 | Soybean | nucleus, plastid | 29.44 | 32.44 |
| CDX98259 | Canola | nucleus | 24.57 | 31.08 |
| CDY06881 | Canola | nucleus | 27.25 | 30.85 |
| Bra016891.1-P | Field mustard | nucleus | 27.25 | 30.85 |
| AT2G42200.1 | Thale cress | nucleus | 27.74 | 30.4 |
| CDY14818 | Canola | nucleus | 27.01 | 30.25 |
| CDX79888 | Canola | nucleus | 27.01 | 30.16 |
| CDY53504 | Canola | nucleus | 26.76 | 29.73 |
| CDY61750 | Canola | nucleus | 22.14 | 29.55 |
| Bra003305.1-P | Field mustard | nucleus | 22.63 | 29.43 |
| Bra004674.1-P | Field mustard | nucleus | 26.28 | 29.27 |
| CDX67715 | Canola | nucleus | 22.38 | 29.11 |
| CDY47656 | Canola | nucleus | 22.63 | 28.7 |
| AT3G57920.1 | Thale cress | nucleus | 23.84 | 27.68 |
| Bra014599.1-P | Field mustard | nucleus | 20.19 | 27.48 |
| TraesCS2A01G413900.1 | Wheat | nucleus | 21.65 | 25.5 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 19.95 | 25.0 |
| TraesCS7A01G494800.1 | Wheat | nucleus | 21.65 | 22.31 |
| TraesCS7A01G260500.1 | Wheat | nucleus | 21.65 | 21.87 |
| TraesCS7A01G495000.1 | Wheat | nucleus | 21.41 | 21.67 |
| TraesCS7A01G495100.1 | Wheat | nucleus | 21.9 | 21.48 |
| TraesCS2A01G502300.1 | Wheat | nucleus | 21.41 | 21.36 |
| TraesCS7A01G494900.1 | Wheat | nucleus | 20.44 | 21.32 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 21.17 | 20.96 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 21.17 | 19.95 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 21.17 | 18.32 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 19.22 | 17.63 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G265900.2 | EnsemblPlantsGene:TraesCS5A01G265900 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF59 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr5A:-:477584523..477587375
Molecular Weight (calculated)
43178.8 Da
IEP (calculated)
8.515
GRAVY (calculated)
-0.779
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: METGGSGGGG DGGGRRPGDD LHGLNFGQKI YFEQDVAGSS SSGGRRGKGP APARAGGGGG GPGASTPAAA GSASQQQQQQ PRCQVEGCGV DLSGGKTYYC
101: RHKVCLEHSK APLVVVAGIE QRFCQQCSRF HQLPEFDQGK RSCRRRLAGH NERRRKPPPG PMSTRYGRLA ASFNEDPGRL RSFLLDFTYP RAPAGVRDPW
201: PAVQAGEHRM PGTTHWQGGH HEHHPHRSAV AGYGDHHAYN GQGSSSGGGG APPPMIPGGF ELPSDECMAG VAADSSCALS LLSTQPWDSS AHSSSHNRSP
301: AMSTTSAFQG SPVAPSVMAS NYMAASSSGS WGSPRGGRSM HHHQQQQQQH HMQHDTVMSE VHPSSVHHGQ FGELELALQQ GRAAPNPPHA EHGSGPGGAF
401: SHSSNAMNWS L
101: RHKVCLEHSK APLVVVAGIE QRFCQQCSRF HQLPEFDQGK RSCRRRLAGH NERRRKPPPG PMSTRYGRLA ASFNEDPGRL RSFLLDFTYP RAPAGVRDPW
201: PAVQAGEHRM PGTTHWQGGH HEHHPHRSAV AGYGDHHAYN GQGSSSGGGG APPPMIPGGF ELPSDECMAG VAADSSCALS LLSTQPWDSS AHSSSHNRSP
301: AMSTTSAFQG SPVAPSVMAS NYMAASSSGS WGSPRGGRSM HHHQQQQQQH HMQHDTVMSE VHPSSVHHGQ FGELELALQQ GRAAPNPPHA EHGSGPGGAF
401: SHSSNAMNWS L
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
Arabidopsis Description
SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.