Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79888 | Canola | nucleus | 85.87 | 87.5 |
| Bra016891.1-P | Field mustard | nucleus | 84.0 | 86.78 |
| CDY53504 | Canola | nucleus | 85.07 | 86.22 |
| CDY06881 | Canola | nucleus | 83.2 | 85.95 |
| Bra004674.1-P | Field mustard | nucleus | 84.53 | 85.91 |
| CDY14818 | Canola | nucleus | 84.0 | 85.83 |
| AT3G57920.1 | Thale cress | nucleus | 54.13 | 57.34 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 47.47 | 46.97 |
| KRH67040 | Soybean | nucleus | 43.47 | 44.41 |
| KRG95361 | Soybean | nucleus | 41.6 | 43.45 |
| AT2G33810.1 | Thale cress | nucleus | 14.4 | 41.22 |
| KRH38141 | Soybean | nucleus, plastid | 40.53 | 40.75 |
| PGSC0003DMT400029751 | Potato | nucleus | 39.47 | 39.78 |
| KRH71914 | Soybean | nucleus, plastid | 37.87 | 39.66 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 29.87 | 39.3 |
| Solyc10g078700.1.1 | Tomato | nucleus | 38.93 | 39.25 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 34.4 | 37.83 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 32.0 | 34.99 |
| AT3G15270.1 | Thale cress | nucleus | 16.8 | 34.81 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 31.2 | 34.01 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 30.13 | 32.66 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 30.67 | 32.21 |
| AT1G53160.1 | Thale cress | nucleus | 14.93 | 32.18 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 33.6 | 30.66 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 29.33 | 29.81 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.47 | 29.67 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 30.4 | 29.38 |
| Zm00001d020941_P001 | Maize | nucleus | 29.6 | 29.37 |
| Zm00001d006028_P001 | Maize | nucleus | 29.87 | 29.24 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 29.6 | 28.76 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 29.33 | 28.57 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 30.13 | 28.54 |
| EER99092 | Sorghum | nucleus | 29.33 | 28.35 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 29.07 | 28.24 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 30.4 | 27.94 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 30.4 | 27.74 |
| EES14266 | Sorghum | nucleus | 30.13 | 27.63 |
| Zm00001d031451_P001 | Maize | nucleus | 29.6 | 27.54 |
| Zm00001d052890_P001 | Maize | nucleus | 29.6 | 27.21 |
| Os09t0491532-01 | Rice | nucleus | 23.2 | 26.93 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 29.6 | 26.68 |
| Os08t0509600-01 | Rice | nucleus | 29.33 | 26.38 |
| AT5G50670.2 | Thale cress | nucleus | 22.93 | 23.96 |
| AT5G50570.2 | Thale cress | nucleus | 22.93 | 23.96 |
| AT1G69170.1 | Thale cress | nucleus | 24.53 | 22.72 |
| AT1G27360.1 | Thale cress | nucleus | 22.13 | 21.12 |
| AT5G43270.1 | Thale cress | nucleus | 23.47 | 21.0 |
| AT1G27370.1 | Thale cress | nucleus | 21.33 | 20.2 |
| AT1G02065.1 | Thale cress | nucleus | 17.33 | 19.52 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:818820 | ProteinID:AAB88645.1 | ProteinID:AEC10085.1 | EMBL:AJ011638 |
| EMBL:AJ011639 | EMBL:AJ628864 | ArrayExpress:AT2G42200 | EnsemblPlantsGene:AT2G42200 | RefSeq:AT2G42200 | TAIR:AT2G42200 |
| RefSeq:AT2G42200-TAIR-G | EnsemblPlants:AT2G42200.1 | TAIR:AT2G42200.1 | EMBL:AY046007 | EMBL:AY150378 | ProteinID:CAB56592.1 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 |
| GO:GO:0048366 | GO:GO:0048653 | GO:GO:2000025 | InterPro:IPR004333 | InterPro:IPR036893 | RefSeq:NP_181749.1 |
| PFAM:PF03110 | PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0009105 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | UniProt:Q700W2 | InterPro:SBP_dom | InterPro:SBP_sf |
| Symbol:SPL9 | SUPFAM:SSF103612 | UniParc:UPI00000AC5C2 | SEG:seg | : | : |
Description
SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
Coordinates
chr2:+:17587169..17589671
Molecular Weight (calculated)
40849.0 Da
IEP (calculated)
8.228
GRAVY (calculated)
-0.926
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.