Factsheet for AT5G50670.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G50570.2	Thale cress	nucleus	100.0	100.0
CDX71667	Canola	nucleus	81.89	81.89
CDX84872	Canola	nucleus	77.44	81.52
Bra022766.1-P	Field mustard	nucleus	77.44	81.29
CDY45826	Canola	nucleus	76.88	80.94
CDY34028	Canola	nucleus	77.99	80.46
KRH59812	Soybean	nucleus	44.57	41.03
AT2G33810.1	Thale cress	nucleus	14.76	40.46
KRH63786	Soybean	nucleus	41.78	40.43
KRH41121	Soybean	nucleus	44.29	40.15
VIT_17s0000g01260.t01	Wine grape	nucleus	44.57	39.9
KRH54164	Soybean	nucleus	43.73	37.92
VIT_01s0010g03910.t01	Wine grape	nucleus	39.28	36.25
PGSC0003DMT400056374	Potato	nucleus	32.03	36.05
Solyc05g015840.2.1	Tomato	nucleus	31.2	35.9
AT1G53160.1	Thale cress	nucleus	14.21	29.31
AT3G15270.1	Thale cress	nucleus	13.65	27.07
AT2G42200.1	Thale cress	nucleus	23.96	22.93
AT1G69170.1	Thale cress	nucleus	24.51	21.73
AT3G57920.1	Thale cress	nucleus	21.17	21.47
AT1G02065.1	Thale cress	nucleus	18.94	20.42
AT1G27370.1	Thale cress	nucleus	22.01	19.95
AT5G43270.1	Thale cress	nucleus	22.56	19.33
AT1G27360.1	Thale cress	nucleus	20.89	19.08

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:835126	EntrezGene:835138	ProteinID:AED95962.1	ProteinID:AED95963.1
ProteinID:AED95977.1	EMBL:AK117475	EMBL:AK317730	ProteinID:ANM70663.1	ArrayExpress:AT5G50670	EnsemblPlantsGene:AT5G50670
RefSeq:AT5G50670	TAIR:AT5G50670	RefSeq:AT5G50670-TAIR-G	EnsemblPlants:AT5G50670.2	EMBL:AY084609	UniProt:B9DI20
ProteinID:BAA96980.1	ProteinID:BAB09142.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0046872	GO:GO:0048653
InterPro:IPR004333	InterPro:IPR036893	RefSeq:NP_001332253.1	RefSeq:NP_568731.1	RefSeq:NP_568740.1	RefSeq:NP_851161.1
UniProt:P0DI11	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF20	InterPro:SBP_dom
InterPro:SBP_sf	Symbol:SPL13B	SUPFAM:SSF103612	UniParc:UPI00000AC5F9	SEG:seg	:

Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]

Coordinates

chr5:-:20615565..20617538

Molecular Weight (calculated)

39110.5 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.495

Length

359 amino acids

Sequence
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.