Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G273900.2 | Wheat | nucleus | 98.99 | 96.08 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 96.97 | 93.43 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 91.92 | 87.5 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 54.55 | 55.96 |
| TraesCS2B01G250900.1 | Wheat | nucleus | 17.17 | 35.42 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 32.58 | 34.04 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 20.45 | 32.93 |
| Solyc10g078700.1.1 | Tomato | nucleus | 30.81 | 32.8 |
| PGSC0003DMT400029751 | Potato | nucleus | 30.81 | 32.8 |
| KRH71914 | Soybean | nucleus, plastid | 29.29 | 32.4 |
| KRH38141 | Soybean | nucleus, plastid | 30.3 | 32.17 |
| KRH67040 | Soybean | nucleus | 29.8 | 32.15 |
| KRG95361 | Soybean | nucleus | 29.04 | 32.03 |
| CDX98259 | Canola | nucleus | 25.25 | 30.77 |
| CDY06881 | Canola | nucleus | 28.03 | 30.58 |
| Bra016891.1-P | Field mustard | nucleus | 28.03 | 30.58 |
| CDX79888 | Canola | nucleus | 28.03 | 30.16 |
| AT2G42200.1 | Thale cress | nucleus | 28.54 | 30.13 |
| CDY14818 | Canola | nucleus | 27.78 | 29.97 |
| CDY53504 | Canola | nucleus | 27.78 | 29.73 |
| Bra004674.1-P | Field mustard | nucleus | 27.27 | 29.27 |
| CDY61750 | Canola | nucleus | 22.73 | 29.22 |
| Bra003305.1-P | Field mustard | nucleus | 23.23 | 29.11 |
| CDX67715 | Canola | nucleus | 22.98 | 28.8 |
| CDY47656 | Canola | nucleus | 23.23 | 28.4 |
| AT3G57920.1 | Thale cress | nucleus | 24.49 | 27.4 |
| Bra014599.1-P | Field mustard | nucleus | 20.71 | 27.15 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 20.96 | 25.38 |
| TraesCS2B01G432700.1 | Wheat | nucleus | 22.47 | 25.21 |
| TraesCS7B01G402300.1 | Wheat | nucleus | 22.22 | 22.56 |
| TraesCS7B01G402200.1 | Wheat | nucleus | 22.47 | 21.34 |
| TraesCS2B01G530400.1 | Wheat | nucleus | 21.97 | 21.32 |
| TraesCS7B01G158500.1 | Wheat | nucleus | 21.97 | 21.27 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 21.97 | 21.01 |
| TraesCS7B01G402400.1 | Wheat | nucleus | 21.21 | 20.95 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 22.47 | 20.55 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 22.22 | 18.6 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 19.19 | 17.19 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G265600.2 | EnsemblPlantsGene:TraesCS5B01G265600 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF59 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr5B:-:450105328..450108207
Molecular Weight (calculated)
41551.0 Da
IEP (calculated)
8.514
GRAVY (calculated)
-0.713
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: METGGSGGGD GGGRRPGDDL HGLNFGQKIY FEQEVAGSSS SGGRKGKGPA PARAGGGGGG SGASTPVAGG NASQPRCQVE GCGVDLSGGK TYYCRHKVCL
101: EHSKAPLVVV AGIEQRFCQQ CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGPMSTRY GRLAASFNED PGRLRSFLLD FSYPRAPAGV RDPWPAVQPG
201: DHRMPGTTHW QGSHHEHHPH RSAVAGYGDH HAYNGQGSSS GGGGAPMIPG GFELPSDECM AGVAADSSCA LSLLSTQPWD SSAHSSSHNR SPAMSTTSAF
301: QGSPVAPSVM ASNYMAASSS GSWGSPRGAR SMQHHHHHMQ HDTVMSEVHP SSVHHGQFGE LELALQQGRA APNPPHAEHG SGGAFSHSSN AMNWSL
101: EHSKAPLVVV AGIEQRFCQQ CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGPMSTRY GRLAASFNED PGRLRSFLLD FSYPRAPAGV RDPWPAVQPG
201: DHRMPGTTHW QGSHHEHHPH RSAVAGYGDH HAYNGQGSSS GGGGAPMIPG GFELPSDECM AGVAADSSCA LSLLSTQPWD SSAHSSSHNR SPAMSTTSAF
301: QGSPVAPSVM ASNYMAASSS GSWGSPRGAR SMQHHHHHMQ HDTVMSEVHP SSVHHGQFGE LELALQQGRA APNPPHAEHG SGGAFSHSSN AMNWSL
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
Arabidopsis Description
SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.