Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G232400.1 | Wheat | nucleus | 98.96 | 98.96 |
| TraesCS2D01G232800.1 | Wheat | nucleus | 98.44 | 98.44 |
| Os07t0505200-01 | Rice | nucleus | 70.83 | 62.96 |
| EER97257 | Sorghum | nucleus | 65.62 | 58.6 |
| HORVU2Hr1G048280.2 | Barley | plastid | 58.33 | 57.44 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 52.08 | 53.48 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 52.08 | 53.48 |
| KRH27270 | Soybean | nucleus | 48.44 | 49.73 |
| Zm00001d006451_P001 | Maize | mitochondrion | 65.62 | 49.61 |
| KRH22053 | Soybean | nucleus | 47.4 | 48.66 |
| Solyc07g053810.2.1 | Tomato | nucleus | 36.98 | 48.3 |
| KRH55227 | Soybean | nucleus | 46.35 | 48.11 |
| KRG88838 | Soybean | nucleus | 47.4 | 47.89 |
| VIT_19s0014g02350.t01 | Wine grape | nucleus | 48.44 | 45.59 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 50.52 | 45.12 |
| PGSC0003DMT400082789 | Potato | nucleus | 38.54 | 44.85 |
| Zm00001d021573_P001 | Maize | mitochondrion | 34.9 | 32.52 |
| KXG36284 | Sorghum | nucleus | 34.38 | 30.28 |
| TraesCS2B01G432700.1 | Wheat | nucleus | 34.9 | 18.98 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 31.77 | 18.65 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 36.46 | 18.13 |
| TraesCS7B01G402300.1 | Wheat | nucleus | 34.9 | 17.18 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 35.42 | 17.17 |
| TraesCS7B01G402400.1 | Wheat | nucleus | 35.42 | 16.96 |
| TraesCS7B01G158500.1 | Wheat | nucleus | 35.94 | 16.87 |
| TraesCS7B01G402200.1 | Wheat | nucleus | 35.94 | 16.55 |
| TraesCS2B01G530400.1 | Wheat | nucleus | 34.9 | 16.42 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 33.85 | 15.7 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 35.94 | 15.61 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 34.38 | 15.24 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 31.77 | 12.9 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G250900.1 | EnsemblPlantsGene:TraesCS2B01G250900 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF60 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr2B:-:260765489..260768248
Molecular Weight (calculated)
20130.6 Da
IEP (calculated)
10.470
GRAVY (calculated)
-0.625
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRKDKSRKS SSAASMAALA AAAAAGDVAR ADGMSGEEDQ KLKLVNVPVV SVGGSSSSAA AVAVRRGSGA AGAVATGAAG AGGPSCQAER CGADLSEAKR
101: YHRRHKVCEA HSKAAVVVVA GLRQRFCQQC SRFHELLEFD DQKRSCRRRL AGHNERRRKS SAEANGGDGC RHADQDGRSH PGNPPLNHFQ IR
101: YHRRHKVCEA HSKAAVVVVA GLRQRFCQQC SRFHELLEFD DQKRSCRRRL AGHNERRRKS SAEANGGDGC RHADQDGRSH PGNPPLNHFQ IR
001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
Arabidopsis Description
SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.