CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22053	Soybean	nucleus	93.05	93.05
KRH55227	Soybean	nucleus	62.03	62.7
KRG88838	Soybean	nucleus	63.64	62.63
GSMUA_Achr1P08440_001	Banana	nucleus	51.34	51.34
VIT_19s0014g02350.t01	Wine grape	nucleus	53.48	49.02
TraesCS2B01G250900.1	Wheat	nucleus	49.73	48.44
TraesCS2A01G232400.1	Wheat	nucleus	49.2	47.92
GSMUA_Achr4P23650_001	Banana	nucleus	47.59	47.59
TraesCS2D01G232800.1	Wheat	nucleus	48.66	47.4
KRH21401	Soybean	nucleus	34.22	46.38
KRH10909	Soybean	nucleus	33.69	45.65
KRH28893	Soybean	nucleus	35.29	45.21
KRH50085	Soybean	nucleus	34.76	44.52
KRH20415	Soybean	nucleus	33.69	44.37
KRH22367	Soybean	nucleus	35.29	41.77
GSMUA_Achr2P03070_001	Banana	nucleus	47.06	40.93
HORVU2Hr1G048280.2	Barley	plastid	41.71	40.0
EER97257	Sorghum	nucleus	43.85	38.14
Os07t0505200-01	Rice	nucleus	43.85	37.96
Zm00001d006451_P001	Maize	mitochondrion	43.85	32.28
KRG88952	Soybean	nucleus	34.76	29.02
Zm00001d021573_P001	Maize	mitochondrion	30.48	27.67
KXG36284	Sorghum	nucleus	29.95	25.69
KRH75288	Soybean	nucleus	34.22	22.3
KRH75287	Soybean	nucleus	36.9	20.06
KRH66611	Soybean	nucleus	35.29	19.64
KRH48747	Soybean	nucleus	35.29	19.53
KRH66613	Soybean	nucleus	35.29	19.3
KRG95361	Soybean	nucleus	36.9	19.22
KRH48746	Soybean	nucleus	33.69	18.42
KRH67040	Soybean	nucleus	35.83	18.26
KRH07602	Soybean	nucleus	20.86	18.06
KRH38141	Soybean	nucleus, plastid	35.83	17.96
KRH71914	Soybean	nucleus, plastid	31.55	16.48
KRH06918	Soybean	nucleus	32.09	16.44
KRG97402	Soybean	nucleus	36.9	15.94
KRG94562	Soybean	nucleus	31.02	15.89
KRH63786	Soybean	nucleus	31.02	15.63
KRH54739	Soybean	nucleus	31.55	15.53
KRH31506	Soybean	nucleus	36.36	15.35
KRH54164	Soybean	nucleus	33.16	14.98
KRH59812	Soybean	nucleus	31.02	14.87
KRH41121	Soybean	nucleus	30.48	14.39
KRH70968	Soybean	nucleus	33.16	12.86
KRH75117	Soybean	nucleus	33.16	12.84
KRH03167	Soybean	nucleus	34.22	11.76
KRH56776	Soybean	nucleus	34.22	11.66
KRH63174	Soybean	nucleus	33.69	11.17

Protein Annotations

EntrezGene:100305703	MapMan:15.5.18	Gene3D:4.10.1100.10	EMBL:ACUP02007792	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G226000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	UniProt:I1LV25	InterPro:IPR004333	InterPro:IPR036893
EnsemblPlants:KRH27270	ProteinID:KRH27270	ProteinID:KRH27270.1	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF64	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000233CA42	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:38560115..38562153

Molecular Weight (calculated)

21008.6 Da

IEP (calculated)

8.666

GRAVY (calculated)

-1.063

Length

187 amino acids

Sequence
(BLAST)

001: MEIKSRERIQ VSIEKVRRDS TVEVEDEEEE DESVVGGEGG LAEDEKKKGG GGSGRRGSSG VSPPSCQAEM CGADLTVAKR YHRRHKVCEL HSKAPSVMVA
101: GLRQRFCQQC SRFQELAEFD EAKRSCRRRL ARHNERRRKS NAETCNEGCS GSKGQHPTES HCRNADVWGR IQMNIAKNSG YNSFHIR

Best Arabidopsis Sequence Match ( AT3G60030.1 )
(BLAST)

001: MEARIEGEVE GHSLEYGFSG KRSVEWDLND WKWNGDLFVA TQLNHGSSNS SSTCSDEGNV EIMERRRIEM EKKKKRRAVT VVAMEEDNLK DDDAHRLTLN
101: LGGNNIEGNG VKKTKLGGGI PSRAICCQVD NCGADLSKVK DYHRRHKVCE IHSKATTALV GGIMQRFCQQ CSRFHVLEEF DEGKRSCRRR LAGHNKRRRK
201: ANPDTIGNGT SMSDDQTSNY MLITLLKILS NIHSNQSDQT GDQDLLSHLL KSLVSQAGEH IGRNLVGLLQ GGGGLQASQN IGNLSALLSL EQAPREDIKH
301: HSVSETPWQE VYANSAQERV APDRSEKQVK VNDFDLNDIY IDSDDTTDIE RSSPPPTNPA TSSLDYHQDS RQSSPPQTSR RNSDSASDQS PSSSSGDAQS
401: RTDRIVFKLF GKEPNDFPVA LRGQILNWLA HTPTDMESYI RPGCIVLTIY LRQDEASWEE LCCDLSFSLR RLLDLSDDPL WTDGWLYLRV QNQLAFAFNG
501: QVVLDTSLPL RSHDYSQIIT VRPLAVTKKA QFTVKGINLR RPGTRLLCTV EGTHLVQEAT QGGMEERDDL KENNEIDFVN FSCEMPIASG RGFMEIEDQG
601: GLSSSFFPFI VSEDEDICSE IRRLESTLEF TGTDSAMQAM DFIHEIGWLL HRSELKSRLA ASDHNPEDLF SLIRFKFLIE FSMDREWCCV MKKLLNILFE
701: EGTVDPSPDA ALSELCLLHR AVRKNSKPMV EMLLRFSPKK KNQTLAGLFR PDAAGPGGLT PLHIAAGKDG SEDVLDALTE DPGMTGIQAW KNSRDNTGFT
801: PEDYARLRGH FSYIHLVQRK LSRKPIAKEH VVVNIPESFN IEHKQEKRSP MDSSSLEITQ INQCKLCDHK RVFVTTHHKS VAYRPAMLSM VAIAAVCVCV
901: ALLFKSCPEV LYVFQPFRWE LLEYGTS

Arabidopsis Description

SPL12Uncharacterized protein At3g60030 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.