Factsheet for VIT_19s0014g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00050.t01	Wine grape	nucleus	40.2	58.57
GSMUA_Achr1P08440_001	Banana	nucleus	52.94	57.75
KRH55227	Soybean	nucleus	51.47	56.76
KRG88838	Soybean	nucleus	51.96	55.79
VIT_12s0028g03350.t01	Wine grape	nucleus	45.1	54.44
KRH22053	Soybean	nucleus	49.02	53.48
KRH27270	Soybean	nucleus	49.02	53.48
GSMUA_Achr4P23650_001	Banana	nucleus	46.08	50.27
TraesCS2D01G232800.1	Wheat	nucleus	46.08	48.96
TraesCS2A01G232400.1	Wheat	nucleus	46.08	48.96
TraesCS2B01G250900.1	Wheat	nucleus	45.59	48.44
GSMUA_Achr2P03070_001	Banana	nucleus	48.53	46.05
EER97257	Sorghum	nucleus	44.12	41.86
HORVU2Hr1G048280.2	Barley	plastid	38.24	40.0
Os07t0505200-01	Rice	nucleus	40.69	38.43
VIT_04s0210g00170.t01	Wine grape	nucleus	33.33	32.85
Zm00001d006451_P001	Maize	mitochondrion	40.2	32.28
Zm00001d021573_P001	Maize	mitochondrion	27.94	27.67
KXG36284	Sorghum	nucleus	28.92	27.06
VIT_15s0021g02300.t01	Wine grape	nucleus	31.37	21.05
VIT_08s0007g06270.t01	Wine grape	nucleus	33.33	17.94
VIT_15s0021g02290.t01	Wine grape	nucleus	33.82	17.29
VIT_14s0068g01780.t01	Wine grape	nucleus	28.92	15.61
VIT_17s0000g01260.t01	Wine grape	nucleus	28.43	14.46
VIT_01s0010g03910.t01	Wine grape	nucleus	26.96	14.14
VIT_01s0010g03710.t01	Wine grape	nucleus	29.41	12.58
VIT_11s0065g00170.t01	Wine grape	nucleus	28.43	12.47
VIT_01s0011g00130.t01	Wine grape	nucleus	27.94	11.24
VIT_17s0000g05020.t01	Wine grape	nucleus	30.39	11.13

Protein Annotations

EntrezGene:100255434	wikigene:100255434	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CBI20271	ProteinID:CBI20271.3
UniProt:E0CSH2	EMBL:FN595229	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100255434	wikigene:LOC100255434	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF64	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI00015C7E12	ArrayExpress:VIT_19s0014g02350
EnsemblPlantsGene:VIT_19s0014g02350	EnsemblPlants:VIT_19s0014g02350.t01	unigene:Vvi.19388	RefSeq:XP_002282598	RefSeq:XP_002282598.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:2484255..2485658

Molecular Weight (calculated)

22677.3 Da

IEP (calculated)

8.398

GRAVY (calculated)

-1.087

Length

204 amino acids

Sequence
(BLAST)

001: MESKSSTTPK ALETKLAFKE KVAPKQETGA IDFDFEEEED DDDDYPYGGR ALFKDDDGIN KKKKTVAAVS GSRSGGGGVG SPCCQAEKCG ADLTDAKRYH
101: RRHKVCEVHA KAAMVEVAGL RQRFCQQCSR FHELSEFDEA KRSCRRRLAG HNERRRKGAS ESQNAEGSGG KEKENQCRQA EERAAGRVEI NLPGTSSYKH
201: FQIR

Best Arabidopsis Sequence Match ( AT1G53160.2 )
(BLAST)

001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR

Arabidopsis Description

SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.