Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P08440_001 | Banana | nucleus | 57.22 | 57.22 |
| TraesCS2B01G250900.1 | Wheat | nucleus | 53.48 | 52.08 |
| TraesCS2A01G232400.1 | Wheat | nucleus | 52.94 | 51.56 |
| TraesCS2D01G232800.1 | Wheat | nucleus | 52.94 | 51.56 |
| KRG88838 | Soybean | nucleus | 50.27 | 49.47 |
| Solyc07g053810.2.1 | Tomato | nucleus | 37.97 | 48.3 |
| KRH22053 | Soybean | nucleus | 48.13 | 48.13 |
| KRH27270 | Soybean | nucleus | 47.59 | 47.59 |
| VIT_19s0014g02350.t01 | Wine grape | nucleus | 50.27 | 46.08 |
| KRH55227 | Soybean | nucleus | 45.45 | 45.95 |
| PGSC0003DMT400082789 | Potato | nucleus | 40.11 | 45.45 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 50.8 | 44.19 |
| EER97257 | Sorghum | nucleus | 50.8 | 44.19 |
| HORVU2Hr1G048280.2 | Barley | plastid | 44.38 | 42.56 |
| Os07t0505200-01 | Rice | nucleus | 47.06 | 40.74 |
| Zm00001d006451_P001 | Maize | mitochondrion | 51.34 | 37.8 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 27.27 | 33.33 |
| Zm00001d021573_P001 | Maize | mitochondrion | 33.69 | 30.58 |
| KXG36284 | Sorghum | nucleus | 33.69 | 28.9 |
| GSMUA_Achr10P... | Banana | nucleus | 31.55 | 25.88 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 33.16 | 24.31 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 34.22 | 23.36 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 33.69 | 23.16 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 34.76 | 22.81 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 33.69 | 21.65 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 35.83 | 19.65 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 35.29 | 19.19 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 32.09 | 18.87 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 34.76 | 18.73 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 32.62 | 18.6 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 31.55 | 18.5 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 34.76 | 18.36 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 33.69 | 18.21 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 33.16 | 18.08 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 35.29 | 17.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.62 | 17.43 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 33.16 | 17.37 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 31.55 | 17.05 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 31.55 | 16.86 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 32.09 | 16.67 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 36.36 | 16.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.02 | 16.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.55 | 15.86 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 31.55 | 15.82 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 30.48 | 15.45 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 31.02 | 15.18 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 31.55 | 15.01 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 31.02 | 14.95 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 32.62 | 14.66 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 32.09 | 14.53 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 32.62 | 14.09 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 34.76 | 14.01 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 33.69 | 13.76 |
| GSMUA_Achr11P... | Banana | nucleus | 30.48 | 13.73 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 33.16 | 13.66 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 31.02 | 13.24 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 33.16 | 13.22 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 17.11 | 13.01 |
| GSMUA_Achr10P... | Banana | nucleus | 32.09 | 12.32 |
| GSMUA_Achr10P... | Banana | nucleus | 33.16 | 12.3 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 30.48 | 10.82 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr4G23650_001 |
| EnsemblPlants:GSMUA_Achr4P23650_001 | EnsemblPlants:GSMUA_Achr4T23650_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0SRH6 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF64 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI00029619AC | SEG:seg | : | : | : | : |
Description
Squamosa promoter-binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G23650_001]
Coordinates
chr4:+:23671545..23672181
Molecular Weight (calculated)
20710.1 Da
IEP (calculated)
10.268
GRAVY (calculated)
-1.226
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRRLSSKP QSKSRKKVRN EMAGAAVHDD GGEEDEEVAP GGEAAEKDKK RRPSSSVATK RGSSSGSGGG VSPPCCQAEK CAADLAEAKR YHRRHRVCEA
101: HSKAAVVIVA GLRQRFCQQC SRFHEVSEFD DSKRSCRRRL AGHNERRRKS SSDSQGDGLS RFRQPDEDGR MQMSDSGNST HKHFQIK
101: HSKAAVVIVA GLRQRFCQQC SRFHEVSEFD DSKRSCRRRL AGHNERRRKS SSDSQGDGLS RFRQPDEDGR MQMSDSGNST HKHFQIK
001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
Arabidopsis Description
SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.