Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P23140_001 | Banana | nucleus | 69.3 | 78.12 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 57.14 | 76.57 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 53.3 | 72.25 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 48.61 | 49.78 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 45.84 | 47.36 |
| GSMUA_Achr10P... | Banana | nucleus | 49.25 | 45.83 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 42.43 | 45.43 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 44.78 | 45.26 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 44.35 | 43.61 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 42.86 | 43.23 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 39.45 | 42.73 |
| Bra033671.1-P | Field mustard | nucleus | 30.49 | 39.5 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 44.14 | 39.28 |
| Solyc05g015510.2.1 | Tomato | nucleus | 38.38 | 38.88 |
| Solyc04g045560.2.1 | Tomato | nucleus | 28.78 | 38.57 |
| PGSC0003DMT400084734 | Potato | nucleus | 38.17 | 38.49 |
| KRG97402 | Soybean | nucleus | 34.75 | 37.64 |
| GSMUA_Achr10P... | Banana | nucleus | 39.02 | 37.58 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 11.94 | 36.6 |
| CDY27611 | Canola | nucleus | 28.14 | 36.16 |
| KRH31506 | Soybean | nucleus | 34.12 | 36.12 |
| CDY43604 | Canola | nucleus | 29.64 | 36.1 |
| PGSC0003DMT400068752 | Potato | nucleus | 29.64 | 36.1 |
| CDX84928 | Canola | nucleus | 27.93 | 35.99 |
| Bra032822.1-P | Field mustard | nucleus | 27.93 | 35.89 |
| CDY32959 | Canola | nucleus | 29.64 | 35.64 |
| Bra027478.1-P | Field mustard | nucleus | 29.64 | 35.64 |
| Bra032823.1-P | Field mustard | nucleus | 24.73 | 35.37 |
| CDY03913 | Canola | nucleus | 27.93 | 35.31 |
| CDY27612 | Canola | nucleus | 24.73 | 35.26 |
| CDX84927 | Canola | nucleus | 27.51 | 35.15 |
| Bra030040.1-P | Field mustard | nucleus | 29.21 | 35.13 |
| CDY15713 | Canola | nucleus | 29.0 | 34.87 |
| AT5G43270.1 | Thale cress | nucleus | 30.49 | 34.13 |
| Bra030041.1-P | Field mustard | nucleus | 27.08 | 33.96 |
| CDY03914 | Canola | nucleus | 26.87 | 33.87 |
| CDY15712 | Canola | nucleus | 26.87 | 33.69 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 13.22 | 33.16 |
| CDY67700 | Canola | nucleus | 24.31 | 32.95 |
| CDY11816 | Canola | nucleus | 25.59 | 32.88 |
| AT1G27370.1 | Thale cress | nucleus | 27.72 | 32.83 |
| Bra010949.1-P | Field mustard | nucleus | 25.16 | 32.24 |
| AT1G27360.1 | Thale cress | nucleus | 26.44 | 31.55 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 12.58 | 31.55 |
| CDY22356 | Canola | nucleus | 34.75 | 31.41 |
| CDY47812 | Canola | nucleus | 34.12 | 31.01 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 18.34 | 30.18 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 15.78 | 29.02 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 16.2 | 27.94 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 16.2 | 27.74 |
| GSMUA_Achr10P... | Banana | nucleus | 13.43 | 27.63 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 12.58 | 27.44 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 19.19 | 26.16 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 18.76 | 25.43 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 18.34 | 25.22 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 15.56 | 25.09 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 18.34 | 25.07 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 16.63 | 24.53 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 16.63 | 24.45 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 19.19 | 24.39 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 18.55 | 24.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.91 | 23.8 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 16.63 | 23.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.76 | 23.66 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 17.48 | 23.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.06 | 22.86 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 17.06 | 22.6 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 18.55 | 22.42 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 17.48 | 22.22 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 18.34 | 21.88 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 16.63 | 21.67 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 17.48 | 21.47 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 18.76 | 21.41 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 16.42 | 20.64 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 10.66 | 20.33 |
| GSMUA_Achr11P... | Banana | nucleus | 17.91 | 20.24 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 17.48 | 19.85 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G27750_001 |
| EnsemblPlants:GSMUA_Achr3P27750_001 | EnsemblPlants:GSMUA_Achr3T27750_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0SIE1 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI000294A244 | SEG:seg | : | : | : | : |
Description
Putative Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr3G27750_001]
Coordinates
chr3:+:27243455..27248515
Molecular Weight (calculated)
51394.0 Da
IEP (calculated)
8.497
GRAVY (calculated)
-0.626
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHEKAHLFS PSGFDTLFRS PLVDSACNLS ARMMDWNANA SLLWDWDNHA PFGGNCKLFG GGASSGSEFG NGSSSKSTIS ASFDSSSKAG KEPEADANPK
101: THEKNKFLQE SGSSLLPAAA AGLEESQIGL KLGKRTYFED VSAESNSKNH PLSSSLDSAS VPTAVLKKSR VSHQSAQSTC CQVEGCNIDL SVAKDYHRKH
201: RVCEMHSKWP KVIVGGQERR FCQQCSRFHE LSEFDQKKRS CRRRLSDHNA RRRKPRTNLI SFNSTNFSSS LYDDKHQMNL LWNKAPFGHM KPVASTNIEG
301: LPSFKLTQKG SWEKSPKDGG TDAQLHLPNA QLSNGFFTLY PDVDKLLPLK GTATEVLNQG SEASAGALNL GGAPDLRRAL SLLSTNSWGS PDPGQTSSIV
401: EFVDASHTST AQPMVPTINS SSHWIHGQPL AQQPQLLPFT MHRSGNQPQE LLLQNTPYRD NLFDPSQIH
101: THEKNKFLQE SGSSLLPAAA AGLEESQIGL KLGKRTYFED VSAESNSKNH PLSSSLDSAS VPTAVLKKSR VSHQSAQSTC CQVEGCNIDL SVAKDYHRKH
201: RVCEMHSKWP KVIVGGQERR FCQQCSRFHE LSEFDQKKRS CRRRLSDHNA RRRKPRTNLI SFNSTNFSSS LYDDKHQMNL LWNKAPFGHM KPVASTNIEG
301: LPSFKLTQKG SWEKSPKDGG TDAQLHLPNA QLSNGFFTLY PDVDKLLPLK GTATEVLNQG SEASAGALNL GGAPDLRRAL SLLSTNSWGS PDPGQTSSIV
401: EFVDASHTST AQPMVPTINS SSHWIHGQPL AQQPQLLPFT MHRSGNQPQE LLLQNTPYRD NLFDPSQIH
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.