Factsheet for Bra032822.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013973.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Bra039762.1-P	AT1G66350.1	22942378
AT1G27360.1	Bra017443.1-P	AT2G01570.1	22942378
AT1G27360.1	Bra024875.1-P	AT2G01570.1	22942378
AT1G27360.1	Bra031991.1-P	AT3G03450.1	22942378
AT1G27360.1	Bra013973.1-P	AT5G17490.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27611	Canola	nucleus	98.9	98.9
Bra030040.1-P	Field mustard	nucleus	80.27	75.13
Bra032823.1-P	Field mustard	nucleus	63.01	70.12
AT1G27360.1	Thale cress	nucleus	75.07	69.72
Bra010949.1-P	Field mustard	nucleus	65.21	65.03
Bra030041.1-P	Field mustard	nucleus	65.48	63.9
Os02t0139400-01	Rice	nucleus	30.14	39.01
Bra005470.1-P	Field mustard	nucleus	13.97	35.92
Bra021880.1-P	Field mustard	nucleus	13.42	34.75
Bra033671.1-P	Field mustard	nucleus	33.15	33.43
KRG97402	Soybean	nucleus	38.08	32.1
Bra027478.1-P	Field mustard	nucleus	33.7	31.54
Os02t0174100-02	Rice	nucleus	21.64	31.47
KRH31506	Soybean	nucleus	38.08	31.38
Bra032662.1-P	Field mustard	nucleus	13.42	31.01
GSMUA_Achr4P12470_001	Banana	nucleus	29.04	30.29
GSMUA_Achr9P23140_001	Banana	nucleus	34.25	30.05
GSMUA_Achr9P14160_001	Banana	nucleus	37.26	29.69
Bra027265.1-P	Field mustard	nucleus	14.52	29.61
VIT_11s0065g00170.t01	Wine grape	nucleus	37.53	29.46
GSMUA_Achr6P36010_001	Banana	nucleus	35.07	29.22
TraesCS6A01G155300.1	Wheat	nucleus	25.75	28.66
TraesCS6D01G145200.1	Wheat	nucleus	25.48	28.62
HORVU6Hr1G031450.6	Barley	nucleus	25.48	28.53
Bra021094.1-P	Field mustard	nucleus	13.7	28.41
Bra039656.1-P	Field mustard	nucleus	13.97	28.33
TraesCS6B01G183400.1	Wheat	nucleus	25.21	28.13
GSMUA_Achr5P22630_001	Banana	nucleus	34.79	27.97
GSMUA_Achr5P21990_001	Banana	nucleus	33.15	27.94
GSMUA_Achr3P27750_001	Banana	nucleus	35.89	27.93
GSMUA_Achr4P05720_001	Banana	nucleus	26.3	27.75
Zm00001d015410_P002	Maize	nucleus	25.21	27.71
EES04609	Sorghum	nucleus	25.48	27.6
TraesCS6B01G138400.1	Wheat	nucleus	35.34	27.27
Zm00001d053775_P001	Maize	nucleus	24.66	27.19
TraesCS6D01G098500.1	Wheat	nucleus	35.07	27.06
TraesCS6A01G110100.2	Wheat	nucleus	35.07	26.95
Bra038101.1-P	Field mustard	nucleus	13.42	26.78
EES04495	Sorghum	nucleus	35.07	26.67
GSMUA_Achr3P05360_001	Banana	nucleus	33.7	26.51
Os06t0703500-02	Rice	nucleus	33.7	25.89
HORVU6Hr1G019700.3	Barley	nucleus	35.89	25.84
Zm00001d014698_P001	Maize	nucleus	30.96	25.74
OQU77017	Sorghum	nucleus	30.96	25.68
Os06t0663500-00	Rice	nucleus	24.11	25.66
GSMUA_Achr10P...	Banana	nucleus	33.7	25.26
GSMUA_Achr10P...	Banana	nucleus	34.79	25.2
Bra004363.1-P	Field mustard	nucleus	19.73	23.92
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	34.79	23.92
Zm00001d053890_P003	Maize	nucleus	31.23	23.65
Bra038324.1-P	Field mustard	nucleus	20.55	23.01
Bra033221.1-P	Field mustard	nucleus	20.27	22.56
GSMUA_Achr8P23820_001	Banana	nucleus	31.78	22.01
Bra016891.1-P	Field mustard	nucleus	21.37	21.49
Bra004674.1-P	Field mustard	nucleus	21.64	21.41
Bra022766.1-P	Field mustard	nucleus	19.45	20.76
Bra014599.1-P	Field mustard	nucleus	16.99	20.53
Bra003305.1-P	Field mustard	nucleus	17.53	20.25

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra032822	EnsemblPlants:Bra032822.1	EnsemblPlants:Bra032822.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4EVI9	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF30	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI00025425EF	SEG:seg	:	:	:	:

Description

AT1G27370 (E=2e-124) | squamosa promoter-binding protein-like 10 (SPL10)

Coordinates

chrA09:-:12596290..12597650

Molecular Weight (calculated)

40785.7 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.691

Length

365 amino acids

Sequence
(BLAST)

001: MDCNMRSPLL WDWENLIISN PSNDKKQLTN TTSEWEIEKG EGIESLFPCL DGLQRVSNDS TTSFWHTTSV SKSSQSTSTN SSSPIIKQTK LASENSPGDS
101: CSNIDFVQVK TSTAVESDLC LKLGKRTYSG RDVSPVSTKL LPPCVVTRKK SKFCGQSSMQ VPRCQVDGCD LDLSSAKDYH RKHRVCETHS KCPKVTVSGV
201: ERRFCQQCSR LHAVSEFDEK KRSCRIRLSH HNARRRKSQG VFPFNPERVY DQRQHTNVVW GTTCDTKPTQ RESGFTLSFQ RGNGSKEEQL FASSNHSLSA
301: YQTSGGFSAG KNKFQLGVGE YSEVLHQSQD FHRAFSLLST SSGPLVHPHA QQPLSLLFSF DGVPK

Best Arabidopsis Sequence Match ( AT1G27360.4 )
(BLAST)

001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK

Arabidopsis Description

SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.