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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0707600-01
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0663500-00 Rice nucleus 49.0 35.86
Os02t0139400-01 Rice nucleus 33.47 29.79
Os07t0505200-01 Rice nucleus 23.51 27.31
Bra032823.1-P Field mustard nucleus 33.86 25.91
CDY27612 Canola nucleus 33.86 25.84
Solyc04g045560.2.1 Tomato nucleus 31.87 22.86
AT1G27370.1 Thale cress nucleus 35.86 22.73
GSMUA_Achr5P21990_001 Banana nucleus 39.04 22.63
CDX84927 Canola nucleus 33.07 22.62
CDY03913 Canola nucleus 32.67 22.1
CDY03914 Canola nucleus 32.67 22.04
VIT_01s0010g03710.t01 Wine grape nucleus 41.83 22.01
AT5G43270.1 Thale cress nucleus 36.65 21.96
Bra030041.1-P Field mustard nucleus 32.67 21.93
CDY27611 Canola nucleus 31.87 21.92
CDY67700 Canola nucleus 29.88 21.68
CDY15712 Canola nucleus 32.27 21.66
Bra032822.1-P Field mustard nucleus 31.47 21.64
PGSC0003DMT400068752 Potato nucleus 33.07 21.56
KRG97402 Soybean nucleus 37.05 21.48
CDX84928 Canola nucleus 31.08 21.43
Bra030040.1-P Field mustard nucleus 33.07 21.28
Solyc05g015510.2.1 Tomato nucleus 39.04 21.17
PGSC0003DMT400084734 Potato nucleus 39.04 21.08
CDY43604 Canola nucleus 32.27 21.04
CDY15713 Canola nucleus 32.67 21.03
Bra027478.1-P Field mustard nucleus 32.67 21.03
CDY32959 Canola nucleus 32.67 21.03
Bra033671.1-P Field mustard nucleus 30.28 20.99
KRH31506 Soybean nucleus 37.05 20.99
Bra010949.1-P Field mustard nucleus 30.28 20.77
AT1G27360.1 Thale cress nucleus 32.27 20.61
CDY11816 Canola nucleus 29.88 20.55
VIT_11s0065g00170.t01 Wine grape nucleus 37.45 20.22
Os06t0703500-02 Rice nucleus 37.45 19.79
Os01t0922600-01 Rice nucleus 22.71 18.33
Os08t0531600-01 Rice nucleus 31.08 17.14
Os08t0509600-01 Rice nucleus 28.29 17.03
CDY22356 Canola nucleus 35.06 16.96
Os04t0551500-01 Rice nucleus 24.3 16.94
CDY47812 Canola nucleus 34.26 16.67
Os09t0507100-00 Rice nucleus 31.08 16.53
Os09t0491532-01 Rice nucleus 20.32 15.79
Os04t0656500-01 Rice nucleus 25.1 15.14
Os06t0659100-00 Rice nucleus 23.9 14.08
Os02t0177300-00 Rice nucleus 23.11 12.39
Protein Annotations
MapMan:15.5.18Gene3D:4.10.1100.10EntrezGene:4328461EMBL:AK061484EMBL:AK066057UniProt:B7EBQ0
ProteinID:BAD26190.1ProteinID:BAD26191.1ProteinID:BAD26192.1ProteinID:BAF07960.1ProteinID:BAS77228.1ProteinID:BAS77229.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0046872EMBL:HQ858810InterPro:IPR004333
InterPro:IPR036893EnsemblPlantsGene:Os02g0174100EnsemblPlants:Os02t0174100-02PFAM:PF03110PFscan:PS51141PANTHER:PTHR31251
PANTHER:PTHR31251:SF7UniProt:Q6H509InterPro:SBP_domInterPro:SBP_sfSUPFAM:SSF103612UniParc:UPI00003B464F
RefSeq:XP_015623077.1SEG:seg::::
Description
RICE SQUAMOSA PROMOTER-BINDING-LIKE 4Similar to Isoform 2 of Squamosa promoter-binding-like protein 4. (Os02t0174100-01);SBP domain containing protein. (Os02t0174100-02);Similar to Isoform 2 of Squamosa promoter-binding-like protein 4. (Os02t0174100-03)
Coordinates
chr2:+:4073890..4077831
Molecular Weight (calculated)
28159.3 Da
IEP (calculated)
9.568
GRAVY (calculated)
-0.578
Length
251 amino acids
Sequence
(BLAST)
001: MDWMPPPKPT SPRSPPLLWD WADAAVPGSS SGEVSAAAAA AAAHPGRRRK EKRGRAEEGG GGGGEVRCQV EGCGVELVGV KDYHRKHRVC EAHSKFPRVV
101: VAGQERRFCQ QCSRFHALSE FDQKKRSCRR RLYDHNARRR KPQTDVFSYA SARPPSSLLF DDNRQISFVW NKAPLSHVRP FAISPWESSS EVGTTDGHIY
201: LDKSHISKSL PAFNTDIDEL LPMKDFSAAT IWMFFGVLFI RTAQESCMSF H
Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.