Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os03t0707600-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G27360.1 | Os03t0707600-01 | AT1G14920.1 | 22942378 |
AT1G27360.1 | Os03t0707600-01 | AT2G01570.1 | 22942378 |
AT1G27370.1 | Os03t0707600-01 | AT1G14920.1 | 22942378 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os06t0663500-00 | Rice | nucleus | 49.0 | 35.86 |
Os02t0139400-01 | Rice | nucleus | 33.47 | 29.79 |
Os07t0505200-01 | Rice | nucleus | 23.51 | 27.31 |
Bra032823.1-P | Field mustard | nucleus | 33.86 | 25.91 |
CDY27612 | Canola | nucleus | 33.86 | 25.84 |
Solyc04g045560.2.1 | Tomato | nucleus | 31.87 | 22.86 |
AT1G27370.1 | Thale cress | nucleus | 35.86 | 22.73 |
GSMUA_Achr5P21990_001 | Banana | nucleus | 39.04 | 22.63 |
CDX84927 | Canola | nucleus | 33.07 | 22.62 |
CDY03913 | Canola | nucleus | 32.67 | 22.1 |
CDY03914 | Canola | nucleus | 32.67 | 22.04 |
VIT_01s0010g03710.t01 | Wine grape | nucleus | 41.83 | 22.01 |
AT5G43270.1 | Thale cress | nucleus | 36.65 | 21.96 |
Bra030041.1-P | Field mustard | nucleus | 32.67 | 21.93 |
CDY27611 | Canola | nucleus | 31.87 | 21.92 |
CDY67700 | Canola | nucleus | 29.88 | 21.68 |
CDY15712 | Canola | nucleus | 32.27 | 21.66 |
Bra032822.1-P | Field mustard | nucleus | 31.47 | 21.64 |
PGSC0003DMT400068752 | Potato | nucleus | 33.07 | 21.56 |
KRG97402 | Soybean | nucleus | 37.05 | 21.48 |
CDX84928 | Canola | nucleus | 31.08 | 21.43 |
Bra030040.1-P | Field mustard | nucleus | 33.07 | 21.28 |
Solyc05g015510.2.1 | Tomato | nucleus | 39.04 | 21.17 |
PGSC0003DMT400084734 | Potato | nucleus | 39.04 | 21.08 |
CDY43604 | Canola | nucleus | 32.27 | 21.04 |
CDY15713 | Canola | nucleus | 32.67 | 21.03 |
Bra027478.1-P | Field mustard | nucleus | 32.67 | 21.03 |
CDY32959 | Canola | nucleus | 32.67 | 21.03 |
Bra033671.1-P | Field mustard | nucleus | 30.28 | 20.99 |
KRH31506 | Soybean | nucleus | 37.05 | 20.99 |
Bra010949.1-P | Field mustard | nucleus | 30.28 | 20.77 |
AT1G27360.1 | Thale cress | nucleus | 32.27 | 20.61 |
CDY11816 | Canola | nucleus | 29.88 | 20.55 |
VIT_11s0065g00170.t01 | Wine grape | nucleus | 37.45 | 20.22 |
Os06t0703500-02 | Rice | nucleus | 37.45 | 19.79 |
Os01t0922600-01 | Rice | nucleus | 22.71 | 18.33 |
Os08t0531600-01 | Rice | nucleus | 31.08 | 17.14 |
Os08t0509600-01 | Rice | nucleus | 28.29 | 17.03 |
CDY22356 | Canola | nucleus | 35.06 | 16.96 |
Os04t0551500-01 | Rice | nucleus | 24.3 | 16.94 |
CDY47812 | Canola | nucleus | 34.26 | 16.67 |
Os09t0507100-00 | Rice | nucleus | 31.08 | 16.53 |
Os09t0491532-01 | Rice | nucleus | 20.32 | 15.79 |
Os04t0656500-01 | Rice | nucleus | 25.1 | 15.14 |
Os06t0659100-00 | Rice | nucleus | 23.9 | 14.08 |
Os02t0177300-00 | Rice | nucleus | 23.11 | 12.39 |
Protein Annotations
MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:4328461 | EMBL:AK061484 | EMBL:AK066057 | UniProt:B7EBQ0 |
ProteinID:BAD26190.1 | ProteinID:BAD26191.1 | ProteinID:BAD26192.1 | ProteinID:BAF07960.1 | ProteinID:BAS77228.1 | ProteinID:BAS77229.1 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | EMBL:HQ858810 | InterPro:IPR004333 |
InterPro:IPR036893 | EnsemblPlantsGene:Os02g0174100 | EnsemblPlants:Os02t0174100-02 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 |
PANTHER:PTHR31251:SF7 | UniProt:Q6H509 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI00003B464F |
RefSeq:XP_015623077.1 | SEG:seg | : | : | : | : |
Description
RICE SQUAMOSA PROMOTER-BINDING-LIKE 4Similar to Isoform 2 of Squamosa promoter-binding-like protein 4. (Os02t0174100-01);SBP domain containing protein. (Os02t0174100-02);Similar to Isoform 2 of Squamosa promoter-binding-like protein 4. (Os02t0174100-03)
Coordinates
chr2:+:4073890..4077831
Molecular Weight (calculated)
28159.3 Da
IEP (calculated)
9.568
GRAVY (calculated)
-0.578
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWMPPPKPT SPRSPPLLWD WADAAVPGSS SGEVSAAAAA AAAHPGRRRK EKRGRAEEGG GGGGEVRCQV EGCGVELVGV KDYHRKHRVC EAHSKFPRVV
101: VAGQERRFCQ QCSRFHALSE FDQKKRSCRR RLYDHNARRR KPQTDVFSYA SARPPSSLLF DDNRQISFVW NKAPLSHVRP FAISPWESSS EVGTTDGHIY
201: LDKSHISKSL PAFNTDIDEL LPMKDFSAAT IWMFFGVLFI RTAQESCMSF H
101: VAGQERRFCQ QCSRFHALSE FDQKKRSCRR RLYDHNARRR KPQTDVFSYA SARPPSSLLF DDNRQISFVW NKAPLSHVRP FAISPWESSS EVGTTDGHIY
201: LDKSHISKSL PAFNTDIDEL LPMKDFSAAT IWMFFGVLFI RTAQESCMSF H
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.