Factsheet for Os06t0703500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0707600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Os03t0707600-01	AT1G14920.1	22942378
AT1G27360.1	Os03t0707600-01	AT2G01570.1	22942378
AT1G27370.1	Os03t0707600-01	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0139400-01	Rice	nucleus	38.11	64.18
OQU77017	Sorghum	nucleus	57.26	61.82
Zm00001d014698_P001	Maize	nucleus	55.16	59.68
GSMUA_Achr5P21990_001	Banana	nucleus	40.42	44.34
VIT_01s0010g03710.t01	Wine grape	nucleus	39.79	39.62
VIT_11s0065g00170.t01	Wine grape	nucleus	37.89	38.71
KRG97402	Soybean	nucleus	34.74	38.11
KRH31506	Soybean	nucleus	35.37	37.92
Os02t0174100-02	Rice	nucleus	19.79	37.45
PGSC0003DMT400084734	Potato	nucleus	36.63	37.42
Solyc05g015510.2.1	Tomato	nucleus	36.0	36.93
PGSC0003DMT400068752	Potato	nucleus	29.89	36.88
Bra033671.1-P	Field mustard	nucleus	28.0	36.74
Bra027478.1-P	Field mustard	nucleus	29.47	35.9
CDY32959	Canola	nucleus	29.47	35.9
CDY43604	Canola	nucleus	29.05	35.84
AT5G43270.1	Thale cress	nucleus	30.32	34.37
CDY27611	Canola	nucleus	26.11	33.97
CDY03913	Canola	nucleus	26.53	33.96
Bra032822.1-P	Field mustard	nucleus	25.89	33.7
AT1G27370.1	Thale cress	nucleus	28.0	33.59
CDY03914	Canola	nucleus	26.11	33.33
CDX84928	Canola	nucleus	25.47	33.24
Solyc04g045560.2.1	Tomato	nucleus	24.42	33.14
Bra030040.1-P	Field mustard	nucleus	27.16	33.08
CDY15712	Canola	nucleus	25.89	32.89
Bra030041.1-P	Field mustard	nucleus	25.89	32.89
CDY15713	Canola	nucleus	26.95	32.82
CDY27612	Canola	nucleus	22.53	32.52
Bra032823.1-P	Field mustard	nucleus	22.32	32.32
AT1G27360.1	Thale cress	nucleus	26.74	32.32
CDY67700	Canola	nucleus	23.37	32.08
CDY11816	Canola	nucleus	24.63	32.05
CDX84927	Canola	nucleus	24.63	31.88
Bra010949.1-P	Field mustard	nucleus	24.21	31.42
Os06t0663500-00	Rice	nucleus	20.63	28.57
CDY22356	Canola	nucleus	31.16	28.52
CDY47812	Canola	nucleus	30.95	28.49
Os07t0505200-01	Rice	nucleus	11.79	25.93
Os04t0656500-01	Rice	nucleus	19.37	22.12
Os04t0551500-01	Rice	nucleus	16.21	21.39
Os09t0491532-01	Rice	nucleus	14.53	21.36
Os08t0509600-01	Rice	nucleus	18.32	20.86
Os09t0507100-00	Rice	nucleus	20.63	20.76
Os01t0922600-01	Rice	nucleus	13.05	19.94
Os08t0531600-01	Rice	nucleus	18.53	19.34
Os06t0659100-00	Rice	nucleus	17.26	19.25
Os02t0177300-00	Rice	nucleus	17.05	17.31

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:4341986	EMBL:AK073179	EMBL:AK102136	ProteinID:BAD54038.1
ProteinID:BAF20413.1	ProteinID:BAS99371.1	ProteinID:EEE66315.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EnsemblPlantsGene:Os06g0703500	EnsemblPlants:Os06t0703500-02	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF65	UniProt:Q5Z818	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI0000446F0D	RefSeq:XP_015643448.1	RefSeq:XP_015643449.1	RefSeq:XP_015643450.1	RefSeq:XP_015643451.1
RefSeq:XP_015643452.1	RefSeq:XP_015643453.1	RefSeq:XP_015643454.1	RefSeq:XP_015643455.1	RefSeq:XP_015643456.1	RefSeq:XP_015643457.1
RefSeq:XP_015643458.1	RefSeq:XP_015643459.1	RefSeq:XP_015643461.1	RefSeq:XP_015643462.1	SEG:seg	:

Description

RICE SQUAMOSA PROMOTER-BINDING-LIKE 12Similar to SBP-domain protein 5 (Fragment). (Os06t0703500-01);Similar to SBP-domain protein 5 (Fragment). (Os06t0703500-02);Similar to Squamosa promoter-binding-like protein 12. (Os06t0703500-03)

Coordinates

chr6:-:29703626..29708260

Molecular Weight (calculated)

50745.4 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.501

Length

475 amino acids

Sequence
(BLAST)

001: MASFGMNWNQ KSPVFWDWEN PAPFGPNTME NPKSIPHPEP RGVVVAAANH GSTNSSGGTF TSSSELANGS SKSSLSASFD SSSKLGNSLE FRFASVKGHG
101: KNMCKDGEAG RVEDSGTSPA VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK SSSAASGVTC PSTVVKKMKV SQQSTQSSYC QVEGCKVDLS SAREYHRKHK
201: VCEAHSKAPK VIVSGLERRF CQQCSRFHGL AEFDQKKKSC RRRLSDHNAR RRKPQQEAIS FGSSRLATMF YDARQQTDIY FGQSPFGQVR SNAISSCDNL
301: GGFKFTEAKL PWMKPMKTIG LEDLNFSTLQ MPGNVVSHTV HHHDFDGLIP FKGNTPKVLN QGVDPACAVV SSNSNGAPDL RRALSLLSSD SWGPADVQAG
401: SQVHPGGVMP PLAVAAATVT APTNPVSVMH ALHPSTGGGG FWQDGDDPPP LDHASQAQAF MHPGNGSSSG YGHLH

Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.