Factsheet for Os02t0139400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0707600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Os03t0707600-01	AT1G14920.1	22942378
AT1G27360.1	Os03t0707600-01	AT2G01570.1	22942378
AT1G27370.1	Os03t0707600-01	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G098500.1	Wheat	nucleus	70.21	41.86
TraesCS6A01G110100.2	Wheat	nucleus	69.15	41.05
TraesCS6B01G138400.1	Wheat	nucleus	68.79	41.01
EES04495	Sorghum	nucleus	67.73	39.79
HORVU6Hr1G019700.3	Barley	nucleus	69.86	38.86
Os06t0703500-02	Rice	nucleus	64.18	38.11
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	64.54	34.27
Zm00001d053890_P003	Maize	nucleus	57.45	33.61
Os02t0174100-02	Rice	nucleus	29.79	33.47
Bra033671.1-P	Field mustard	nucleus	42.55	33.15
CDY27612	Canola	nucleus	37.94	32.52
Bra032823.1-P	Field mustard	nucleus	37.59	32.32
GSMUA_Achr5P21990_001	Banana	nucleus	48.23	31.41
VIT_01s0010g03710.t01	Wine grape	nucleus	52.48	31.03
Bra032822.1-P	Field mustard	nucleus	39.01	30.14
CDX84928	Canola	nucleus	38.65	29.95
CDY27611	Canola	nucleus	38.65	29.86
AT1G27370.1	Thale cress	nucleus	41.84	29.8
KRG97402	Soybean	nucleus	45.74	29.79
CDY03913	Canola	nucleus	39.01	29.65
AT5G43270.1	Thale cress	nucleus	43.62	29.36
CDY32959	Canola	nucleus	40.43	29.23
Bra027478.1-P	Field mustard	nucleus	40.43	29.23
Bra030040.1-P	Field mustard	nucleus	40.43	29.23
CDX84927	Canola	nucleus	37.94	29.16
CDY15712	Canola	nucleus	38.65	29.14
Bra030041.1-P	Field mustard	nucleus	38.65	29.14
KRH31506	Soybean	nucleus	45.74	29.12
CDY03914	Canola	nucleus	38.3	29.03
AT1G27360.1	Thale cress	nucleus	40.43	29.01
CDY15713	Canola	nucleus	40.07	28.97
PGSC0003DMT400084734	Potato	nucleus	47.52	28.82
VIT_11s0065g00170.t01	Wine grape	nucleus	47.16	28.6
CDY43604	Canola	nucleus	39.01	28.57
Solyc05g015510.2.1	Tomato	nucleus	46.81	28.51
CDY67700	Canola	nucleus	34.4	28.03
CDY11816	Canola	nucleus	36.17	27.95
Os07t0505200-01	Rice	nucleus	21.28	27.78
Bra010949.1-P	Field mustard	nucleus	35.82	27.6
PGSC0003DMT400068752	Potato	nucleus	36.52	26.75
CDY47812	Canola	nucleus	44.68	24.42
Solyc04g045560.2.1	Tomato	nucleus	30.14	24.29
CDY22356	Canola	nucleus	43.97	23.89
Os06t0663500-00	Rice	nucleus	25.89	21.28
Os04t0551500-01	Rice	nucleus	23.05	18.06
Os04t0656500-01	Rice	nucleus	26.6	18.03
Os08t0509600-01	Rice	nucleus	26.24	17.75
Os09t0507100-00	Rice	nucleus	28.01	16.74
Os08t0531600-01	Rice	nucleus	26.24	16.26
Os01t0922600-01	Rice	nucleus	17.38	15.76
Os06t0659100-00	Rice	nucleus	23.76	15.73
Os09t0491532-01	Rice	nucleus	17.38	15.17
Os02t0177300-00	Rice	nucleus	24.82	14.96

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A0A0P0VEG1	ProteinID:BAS76904.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EnsemblPlantsGene:Os02g0139400	EnsemblPlants:Os02t0139400-01
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF24	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI000393913B	SEG:seg	:	:	:

Description

RICE SQUAMOSA PROMOTER-BINDING-LIKE 3Similar to Squamosa promoter-binding-like protein 3. (Os02t0139400-01)

Coordinates

chr2:+:2106368..2110510

Molecular Weight (calculated)

30593.2 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.595

Length

282 amino acids

Sequence
(BLAST)

001: MGSFGMDWNQ KSSVLWDWEN MPPIGNSANE NPKNVMLAES KLAGVGVDIG HESGHSSGGT FSSSSEIGYG SSKSSISASI DSPSKVGNTI ELNFASAEEH
101: DKNMDKGKSK VDDTGTSRSP VVAANRVEPL IGLKLGKRTY FEDVCGGQNV KSSPSGVSVA TPSPGLAKKV KVAQQNTQNP HCQVEGCNVD LSSAKPYHRK
201: HRVCEPHSKT LKVIVAGLER RFCQQCSRFH GLAEFDQKKR SCRRRLHDHN ARRRKPQPEA ISLSSSRLST LLYGGIKILF AL

Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.