Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013465_P001 | |
| Zm00001d033680_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04495 | Sorghum | nucleus | 72.69 | 80.42 |
| Os02t0139400-01 | Rice | nucleus | 34.27 | 64.54 |
| Zm00001d053890_P003 | Maize | nucleus | 56.87 | 62.66 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 52.73 | 59.2 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 52.73 | 59.2 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 52.17 | 58.32 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 54.61 | 57.2 |
| Zm00001d014698_P001 | Maize | nucleus | 41.62 | 50.34 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 31.45 | 38.57 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 33.71 | 37.53 |
| Solyc04g045560.2.1 | Tomato | nucleus | 23.54 | 35.71 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 31.26 | 35.7 |
| CDY03913 | Canola | nucleus | 24.86 | 35.58 |
| KRG97402 | Soybean | nucleus | 29.0 | 35.57 |
| PGSC0003DMT400084734 | Potato | nucleus | 31.07 | 35.48 |
| PGSC0003DMT400068752 | Potato | nucleus | 25.61 | 35.32 |
| KRH31506 | Soybean | nucleus | 29.38 | 35.21 |
| AT1G27370.1 | Thale cress | nucleus | 26.18 | 35.1 |
| CDY27611 | Canola | nucleus | 24.11 | 35.07 |
| Bra033671.1-P | Field mustard | nucleus | 23.73 | 34.81 |
| Bra032822.1-P | Field mustard | nucleus | 23.92 | 34.79 |
| Solyc05g015510.2.1 | Tomato | nucleus | 30.32 | 34.77 |
| CDY32959 | Canola | nucleus | 25.42 | 34.62 |
| Bra027478.1-P | Field mustard | nucleus | 25.42 | 34.62 |
| CDY43604 | Canola | nucleus | 25.05 | 34.55 |
| Zm00001d053775_P001 | Maize | nucleus | 21.47 | 34.44 |
| CDX84928 | Canola | nucleus | 23.54 | 34.34 |
| Bra030040.1-P | Field mustard | nucleus | 25.05 | 34.1 |
| Zm00001d015410_P002 | Maize | nucleus | 21.28 | 34.04 |
| CDY15713 | Canola | nucleus | 24.86 | 33.85 |
| AT1G27360.1 | Thale cress | nucleus | 25.05 | 33.84 |
| CDY27612 | Canola | nucleus | 20.9 | 33.74 |
| Bra032823.1-P | Field mustard | nucleus | 20.72 | 33.54 |
| CDY67700 | Canola | nucleus | 21.47 | 32.95 |
| AT5G43270.1 | Thale cress | nucleus | 25.99 | 32.94 |
| CDY03914 | Canola | nucleus | 22.41 | 31.99 |
| Bra010949.1-P | Field mustard | nucleus | 22.03 | 31.97 |
| CDX84927 | Canola | nucleus | 22.03 | 31.88 |
| CDY15712 | Canola | nucleus | 22.22 | 31.55 |
| Bra030041.1-P | Field mustard | nucleus | 22.22 | 31.55 |
| CDY11816 | Canola | nucleus | 21.66 | 31.51 |
| CDY47812 | Canola | nucleus | 28.63 | 29.46 |
| CDY22356 | Canola | nucleus | 28.44 | 29.09 |
| Zm00001d006451_P001 | Maize | mitochondrion | 12.43 | 25.98 |
| Zm00001d021573_P001 | Maize | mitochondrion | 9.6 | 24.76 |
| Zm00001d020941_P001 | Maize | nucleus | 16.38 | 23.02 |
| Zm00001d012015_P001 | Maize | nucleus | 16.2 | 22.93 |
| Zm00001d026491_P001 | Maize | nucleus | 16.57 | 22.22 |
| Zm00001d026175_P001 | Maize | nucleus | 16.57 | 22.06 |
| Zm00001d002005_P001 | Maize | nucleus | 16.38 | 21.8 |
| Zm00001d006028_P001 | Maize | nucleus | 15.63 | 21.67 |
| Zm00001d006091_P001 | Maize | nucleus | 17.14 | 21.51 |
| Zm00001d042319_P001 | Maize | nucleus | 16.38 | 21.27 |
| Zm00001d049824_P002 | Maize | nucleus | 16.38 | 20.0 |
| Zm00001d049822_P001 | Maize | nucleus | 16.2 | 19.91 |
| Zm00001d021056_P001 | Maize | nucleus | 17.33 | 19.78 |
| Zm00001d052890_P001 | Maize | nucleus | 15.07 | 19.61 |
| Zm00001d031451_P001 | Maize | nucleus | 14.5 | 19.11 |
| Zm00001d036692_P001 | Maize | nucleus | 14.69 | 17.97 |
| Zm00001d053756_P001 | Maize | nucleus | 13.56 | 17.73 |
| Zm00001d046906_P001 | Maize | nucleus | 13.94 | 17.45 |
| Zm00001d015451_P001 | Maize | nucleus | 14.12 | 17.01 |
Protein Annotations
| EntrezGene:100279234 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | UniProt:A0A1D6H093 | ProteinID:AQK68365.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF24 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| SignalP:SignalP-noTM | UniParc:UPI000844B2EA | EnsemblPlantsGene:Zm00001d015233 | EnsemblPlants:Zm00001d015233_P001 | EnsemblPlants:Zm00001d015233_T001 | SEG:seg |
Description
SBP-transcription factor 27Squamosa promoter-binding-like protein 2
Coordinates
chr5:+:80234208..80238992
Molecular Weight (calculated)
56618.5 Da
IEP (calculated)
9.694
GRAVY (calculated)
-0.494
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLQIRPVPA ASTTRTLSVL NLFLSTILLL QRGSCLGRQV GAAAQTSDLG MGSFGMDWNQ KASVLWDWEN LPPVAVGASG SENPRMAAAP QALHSACGTI
101: SSSSEMGYGS SKSSVSASAD DSSPKAKGKS MELNFAPDKV PDKNTDSGKV DDARTSPSSP VIAISSAEPV LSLKLGKRTY FEDVCGGQSV KSLPSDTSAV
201: TPPPASPKKT KVTPNKKSYC QVEGCKVDLS SAKEYHRKHR VCEPHSKAPK VVVAGLERRF CQQCSRFHGL AEFDQKKKSC RRRLNDHNAR RRKPQPEALS
301: FGSSRLSAMF YDTRQHTSLL FGQGPYGQMR SCASSSWDNP GGGFKFAETK GPWLRAGGVD GLHQPSQQVW NNFMPHGVHQ DFDGFTAFKG TNAKVLHQVN
401: EHQSQFPSNI RNGAPQPDLH RALSLLSNSW AGGGTGTGTD QHPTAQLRHA ALSSSLAASS VSVAQASPAG LWQDGGAALG HHDYAHAFQA INTPGGGGAA
501: APIAVGQELL QLPRPPSLYD DGSSSRYDLM R
101: SSSSEMGYGS SKSSVSASAD DSSPKAKGKS MELNFAPDKV PDKNTDSGKV DDARTSPSSP VIAISSAEPV LSLKLGKRTY FEDVCGGQSV KSLPSDTSAV
201: TPPPASPKKT KVTPNKKSYC QVEGCKVDLS SAKEYHRKHR VCEPHSKAPK VVVAGLERRF CQQCSRFHGL AEFDQKKKSC RRRLNDHNAR RRKPQPEALS
301: FGSSRLSAMF YDTRQHTSLL FGQGPYGQMR SCASSSWDNP GGGFKFAETK GPWLRAGGVD GLHQPSQQVW NNFMPHGVHQ DFDGFTAFKG TNAKVLHQVN
401: EHQSQFPSNI RNGAPQPDLH RALSLLSNSW AGGGTGTGTD QHPTAQLRHA ALSSSLAASS VSVAQASPAG LWQDGGAALG HHDYAHAFQA INTPGGGGAA
501: APIAVGQELL QLPRPPSLYD DGSSSRYDLM R
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.