Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006091_P001 | Maize | nucleus | 79.57 | 87.47 |
| EER97011 | Sorghum | nucleus | 85.59 | 85.78 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 66.88 | 71.82 |
| TraesCS5D01G294400.1 | Wheat | nucleus | 66.24 | 71.3 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 66.24 | 70.64 |
| Os09t0507100-00 | Rice | nucleus | 65.38 | 64.41 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 51.83 | 61.48 |
| Zm00001d049822_P001 | Maize | nucleus | 55.27 | 59.49 |
| Zm00001d049824_P002 | Maize | nucleus | 54.62 | 58.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.28 | 50.86 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 33.98 | 49.53 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.77 | 48.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.71 | 48.39 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 40.22 | 45.28 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 32.26 | 41.67 |
| GSMUA_Achr11P... | Banana | nucleus | 36.99 | 41.45 |
| Zm00001d012015_P001 | Maize | nucleus | 30.75 | 38.13 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 29.25 | 35.98 |
| Zm00001d042319_P001 | Maize | nucleus | 31.18 | 35.45 |
| KRG94562 | Soybean | nucleus | 27.53 | 35.07 |
| KRH06918 | Soybean | nucleus | 27.1 | 34.52 |
| Zm00001d021573_P001 | Maize | mitochondrion | 13.33 | 30.1 |
| Zm00001d015410_P002 | Maize | nucleus | 20.0 | 28.01 |
| Zm00001d053775_P001 | Maize | nucleus | 19.14 | 26.89 |
| Zm00001d006451_P001 | Maize | mitochondrion | 13.76 | 25.2 |
| Zm00001d020941_P001 | Maize | nucleus | 20.22 | 24.87 |
| Zm00001d026175_P001 | Maize | nucleus | 20.0 | 23.31 |
| Zm00001d006028_P001 | Maize | nucleus | 19.14 | 23.24 |
| Zm00001d052890_P001 | Maize | nucleus | 20.22 | 23.04 |
| Zm00001d031451_P001 | Maize | nucleus | 19.35 | 22.33 |
| Zm00001d002005_P001 | Maize | nucleus | 18.49 | 21.55 |
| Zm00001d015451_P001 | Maize | nucleus | 19.78 | 20.86 |
| Zm00001d053756_P001 | Maize | nucleus | 18.06 | 20.69 |
| Zm00001d046906_P001 | Maize | nucleus | 18.71 | 20.52 |
| Zm00001d014698_P001 | Maize | nucleus | 19.35 | 20.5 |
| Zm00001d026491_P001 | Maize | nucleus | 17.42 | 20.45 |
| Zm00001d036692_P001 | Maize | nucleus | 18.92 | 20.28 |
| Zm00001d053890_P003 | Maize | nucleus | 20.86 | 20.12 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 19.78 | 17.33 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.65 | 5.17 |
Protein Annotations
| EntrezGene:100217221 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | UniProt:A0A1D6I853 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | ProteinID:ONM56225.1 | PFAM:PF03110 | PFscan:PS51141 |
| PANTHER:PTHR31251 | PANTHER:PTHR31251:SF33 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004DE828E |
| EnsemblPlantsGene:Zm00001d021056 | EnsemblPlants:Zm00001d021056_P001 | EnsemblPlants:Zm00001d021056_T001 | SEG:seg | : | : |
Description
Squamosa promoter-binding-like protein 6
Coordinates
chr7:+:141662438..141666340
Molecular Weight (calculated)
48011.1 Da
IEP (calculated)
7.351
GRAVY (calculated)
-0.374
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDLKMPVS WDLPDLEHDA VPPPIAAAAS AAPSPAAASG IAAAAAGPPP AAAPRGAPSR AECSVDLKLG GLGEFGAADG TKEPVVAAAA AAAAAPPSAS
101: PMKRPRSGPG GAAGAQCPSC AVDGCKADLS KCRDYHRRHK VCEAHSKTPV VAVAGREMRF CQQCSRFHLL AEFDEAKRSC RKRLDGHNRR RRKPQPDTMS
201: SGSFMTSQQG TRFSSFPVPR PEPSWPGVIK SEDSGSYYAH QRHPVLSSRP HFAGGGSTPP AYSSKEGRRF PFLQDGCDQQ QVGGFSAGAG AQQLEVSSTS
301: TVCQPLLKAA AAAAPPPPPE SSSSNKMFSD GLAPAVLDSD CALSLLSSPA NSSSVDVGRM VVHQPAEHIP MAQPLVPGGL QQQQQHHPFG GSPAWFACSQ
401: AGSSAVSAGG FACPPGVESE QLNTVLVPSS DGGGHDMNMN YHGIFHVGGD GSSDGTSPSL PFSWQ
101: PMKRPRSGPG GAAGAQCPSC AVDGCKADLS KCRDYHRRHK VCEAHSKTPV VAVAGREMRF CQQCSRFHLL AEFDEAKRSC RKRLDGHNRR RRKPQPDTMS
201: SGSFMTSQQG TRFSSFPVPR PEPSWPGVIK SEDSGSYYAH QRHPVLSSRP HFAGGGSTPP AYSSKEGRRF PFLQDGCDQQ QVGGFSAGAG AQQLEVSSTS
301: TVCQPLLKAA AAAAPPPPPE SSSSNKMFSD GLAPAVLDSD CALSLLSSPA NSSSVDVGRM VVHQPAEHIP MAQPLVPGGL QQQQQHHPFG GSPAWFACSQ
401: AGSSAVSAGG FACPPGVESE QLNTVLVPSS DGGGHDMNMN YHGIFHVGGD GSSDGTSPSL PFSWQ
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.