Factsheet for Zm00001d053775_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013465_P001
Zm00001d033680_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	Zm00001d013465_P001	AT1G14920.1	22942378
AT1G27360.1	Zm00001d033680_P001	AT1G14920.1	22942378
AT1G27360.1	Zm00001d013465_P001	AT2G01570.1	22942378
AT1G27360.1	Zm00001d033680_P001	AT2G01570.1	22942378
AT1G27370.1	Zm00001d013465_P001	AT1G14920.1	22942378
AT1G27370.1	Zm00001d033680_P001	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015410_P002	Maize	nucleus	83.08	82.83
HORVU6Hr1G031450.6	Barley	nucleus	67.98	69.02
TraesCS6B01G183400.1	Wheat	nucleus	67.98	68.81
TraesCS6D01G145200.1	Wheat	nucleus	67.37	68.62
TraesCS6A01G155300.1	Wheat	nucleus	67.67	68.29
Os06t0663500-00	Rice	nucleus	51.96	50.15
GSMUA_Achr5P21990_001	Banana	nucleus	36.25	27.71
VIT_01s0010g03710.t01	Wine grape	nucleus	39.88	27.67
PGSC0003DMT400068752	Potato	nucleus	31.72	27.27
KRG97402	Soybean	nucleus	35.65	27.25
Solyc04g045560.2.1	Tomato	nucleus	28.7	27.14
VIT_11s0065g00170.t01	Wine grape	nucleus	38.07	27.1
KRH31506	Soybean	nucleus	36.25	27.09
Bra033671.1-P	Field mustard	nucleus	28.7	26.24
Zm00001d021573_P001	Maize	mitochondrion	16.01	25.73
Solyc05g015510.2.1	Tomato	nucleus	35.95	25.7
PGSC0003DMT400084734	Potato	nucleus	35.65	25.38
CDY32959	Canola	nucleus	29.61	25.13
Bra027478.1-P	Field mustard	nucleus	29.61	25.13
Bra032823.1-P	Field mustard	nucleus	24.77	25.0
CDY27612	Canola	nucleus	24.77	24.92
AT5G43270.1	Thale cress	nucleus	31.42	24.82
CDX84928	Canola	nucleus	27.19	24.73
CDY43604	Canola	nucleus	28.7	24.68
CDY27611	Canola	nucleus	27.19	24.66
Bra032822.1-P	Field mustard	nucleus	27.19	24.66
CDY15712	Canola	nucleus	27.79	24.6
Bra030041.1-P	Field mustard	nucleus	27.79	24.6
CDY03913	Canola	nucleus	27.49	24.53
Zm00001d053890_P003	Maize	nucleus	35.65	24.48
CDY03914	Canola	nucleus	27.49	24.46
CDX84927	Canola	nucleus	26.89	24.25
AT1G27370.1	Thale cress	nucleus	29.0	24.24
CDY67700	Canola	nucleus	24.77	23.7
Zm00001d014698_P001	Maize	nucleus	31.42	23.69
Bra030040.1-P	Field mustard	nucleus	27.79	23.59
CDY15713	Canola	nucleus	27.49	23.33
Zm00001d006451_P001	Maize	mitochondrion	17.52	22.83
CDY11816	Canola	nucleus	25.08	22.74
Bra010949.1-P	Field mustard	nucleus	25.08	22.68
Zm00001d006028_P001	Maize	nucleus	25.68	22.19
AT1G27360.1	Thale cress	nucleus	25.98	21.88
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	34.44	21.47
Zm00001d020941_P001	Maize	nucleus	24.47	21.43
Zm00001d026175_P001	Maize	nucleus	25.68	21.3
Zm00001d042319_P001	Maize	nucleus	26.28	21.27
Zm00001d012015_P001	Maize	nucleus	23.87	21.07
Zm00001d006091_P001	Maize	nucleus	26.89	21.04
Zm00001d049822_P001	Maize	nucleus	27.19	20.83
Zm00001d049824_P002	Maize	nucleus	27.19	20.69
Zm00001d002005_P001	Maize	nucleus	24.47	20.3
CDY22356	Canola	nucleus	31.72	20.23
Zm00001d026491_P001	Maize	nucleus	24.17	20.2
CDY47812	Canola	nucleus	31.12	19.96
Zm00001d021056_P001	Maize	nucleus	26.89	19.14
Zm00001d052890_P001	Maize	nucleus	22.96	18.63
Zm00001d031451_P001	Maize	nucleus	22.66	18.61
Zm00001d053756_P001	Maize	nucleus	20.54	16.75
Zm00001d036692_P001	Maize	nucleus	20.54	15.67
Zm00001d015451_P001	Maize	nucleus	20.85	15.65
Zm00001d046906_P001	Maize	nucleus	19.64	15.33

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:AQK60316.1	EMBL:BT088183	UniProt:C4JBI6	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF7	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0001A4BB21
EnsemblPlantsGene:Zm00001d053775	EnsemblPlants:Zm00001d053775_P001	EnsemblPlants:Zm00001d053775_T001	SEG:seg	:	:

Description

SBP-transcription factor 19Squamosa promoter-binding-like protein 2

Coordinates

chr4:-:240849637..240853547

Molecular Weight (calculated)

36184.1 Da

IEP (calculated)

8.828

GRAVY (calculated)

-0.687

Length

331 amino acids

Sequence
(BLAST)

001: MEWTAPKRAA SPPSPPLLWD WGGDHAGATG SGSGSSGDAP ARRGGREREA KRARADDGEV RCQVEGCGLD LSRVKEYHRK HRVCEAHTKS PRVVVAGQER
101: RFCQQCSRFH ALSEFDQKKR SCRRRLSDHN ARRRKPQPDA FAFASARLPS SSFDDRRQIS FVWNKAPVSH PFTSPWDSSS ELPHAKEIRE VSTKVGTITG
201: QVHLDKSYVS NAVPSLTHGK DEPWPMKGPD MSIAASKFDG APDLQRALSL LSVGACGLPD PVHQTSCVIQ FTSASENSGD LHLSHGANSG LASCGDGQHI
301: ASQPQAQLVR FTMDTSNSVY EPSFFSVNQI N

Best Arabidopsis Sequence Match ( AT5G43270.1 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.