Factsheet for Zm00001d006451_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97257	Sorghum	nucleus	74.41	87.91
TraesCS2B01G250900.1	Wheat	nucleus	49.61	65.62
TraesCS2D01G232800.1	Wheat	nucleus	49.21	65.1
TraesCS2A01G232400.1	Wheat	nucleus	49.21	65.1
Os07t0505200-01	Rice	nucleus	51.18	60.19
GSMUA_Achr4P23650_001	Banana	nucleus	37.8	51.34
HORVU2Hr1G048280.2	Barley	plastid	38.19	49.74
GSMUA_Achr1P08440_001	Banana	nucleus	36.22	49.2
VIT_12s0028g03350.t01	Wine grape	nucleus	31.5	47.34
VIT_10s0003g00050.t01	Wine grape	nucleus	25.59	46.43
PGSC0003DMT400085174	Potato	nucleus	23.62	45.11
AT2G33810.1	Thale cress	nucleus	23.23	45.04
KRH21401	Soybean	nucleus	24.41	44.93
KRH10909	Soybean	nucleus	24.41	44.93
KRH20415	Soybean	nucleus	24.8	44.37
Bra005470.1-P	Field mustard	nucleus	24.8	44.37
KRH22053	Soybean	nucleus	32.28	43.85
KRH27270	Soybean	nucleus	32.28	43.85
Solyc07g062980.2.1	Tomato	nucleus	22.44	43.18
CDY17204	Canola	nucleus	24.02	42.96
CDY27935	Canola	nucleus	24.8	42.86
KRH50085	Soybean	nucleus	24.41	42.47
KRG88838	Soybean	nucleus	31.5	42.11
GSMUA_Achr2P03070_001	Banana	nucleus	35.43	41.86
CDY57212	Canola	nucleus	23.23	41.84
CDY37684	Canola	nucleus	23.23	41.84
KRH55227	Soybean	nucleus	30.32	41.62
Bra021880.1-P	Field mustard	nucleus	22.83	41.13
CDY24113	Canola	nucleus	25.98	40.99
VIT_19s0014g02350.t01	Wine grape	nucleus	32.28	40.2
KRH22367	Soybean	nucleus	24.8	39.87
CDY50515	Canola	nucleus	24.02	38.85
AT1G53160.1	Thale cress	nucleus	26.38	38.51
AT3G15270.1	Thale cress	nucleus	27.17	38.12
CDX98540	Canola	nucleus	26.77	37.99
CDY25876	Canola	nucleus	25.98	37.5
CDX97645	Canola	nucleus	26.38	37.43
Bra027265.1-P	Field mustard	nucleus	26.38	37.43
Bra039656.1-P	Field mustard	nucleus	26.38	37.22
Bra038101.1-P	Field mustard	nucleus	26.38	36.61
CDX79544	Canola	nucleus	26.77	36.36
CDY20128	Canola	nucleus	25.2	36.36
CDY61210	Canola	nucleus	25.59	36.31
Bra021094.1-P	Field mustard	nucleus	24.8	35.8
CDY32310	Canola	nucleus	24.02	34.66
Zm00001d021573_P001	Maize	mitochondrion	27.95	34.47
Zm00001d026175_P001	Maize	nucleus	27.56	17.54
Zm00001d053775_P001	Maize	nucleus	22.83	17.52
Zm00001d015410_P002	Maize	nucleus	22.83	17.47
Zm00001d031451_P001	Maize	nucleus	27.17	17.12
Zm00001d012015_P001	Maize	nucleus	25.2	17.07
Zm00001d020941_P001	Maize	nucleus	24.8	16.67
Zm00001d006028_P001	Maize	nucleus	24.8	16.45
Zm00001d052890_P001	Maize	nucleus	26.38	16.42
Zm00001d026491_P001	Maize	nucleus	25.59	16.41
Zm00001d002005_P001	Maize	nucleus	25.59	16.29
Zm00001d046906_P001	Maize	nucleus	26.77	16.04
Zm00001d036692_P001	Maize	nucleus	27.17	15.9
Zm00001d042319_P001	Maize	nucleus	25.2	15.65
Zm00001d053756_P001	Maize	nucleus	23.62	14.78
Zm00001d006091_P001	Maize	nucleus	24.41	14.66
Zm00001d015451_P001	Maize	nucleus	25.2	14.51
Zm00001d049822_P001	Maize	nucleus	24.02	14.12
Zm00001d021056_P001	Maize	nucleus	25.2	13.76
Zm00001d053890_P003	Maize	nucleus	25.98	13.69
Zm00001d049824_P002	Maize	nucleus	22.83	13.33
Zm00001d014698_P001	Maize	nucleus	22.83	13.21
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	25.98	12.43

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A0A1D6EWJ8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	ProteinID:ONM23888.1	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF60	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0008454DE2	EnsemblPlantsGene:Zm00001d006451
EnsemblPlants:Zm00001d006451_P001	EnsemblPlants:Zm00001d006451_T001	SEG:seg	:	:	:

Description

SBP-transcription factor 13Squamosa promoter-binding-like protein 5

Coordinates

chr2:-:208544401..208546453

Molecular Weight (calculated)

25668.0 Da

IEP (calculated)

10.995

GRAVY (calculated)

-0.499

Length

254 amino acids

Sequence
(BLAST)

001: MRGTAPELQL HIASSRAAPR SPRPASSLAA GAAMDRKSKS AKGAASSAAA SMAALAAAAA AGDSSSGPAD GAPPPPPPHG EEYSVPAKMA AVGDASSSSP
101: VAPRRGVAAA LGGGASSSSP AAVRRGAAAA AAASVVAAGG GGGPRCQAER CNANLMTEEK PYNRRHKVCE AHSKAPVVLV AGLRQRFCQQ CSRFHELSEF
201: DDVKRSCRLR LAGHNERRRK SSADAHAGGG NNGFRQHADQ NGRGDPAGNH FQIR

Best Arabidopsis Sequence Match ( AT3G15270.1 )
(BLAST)

001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R

Arabidopsis Description

SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.