Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021094.1-P | Field mustard | nucleus | 94.89 | 94.89 |
| CDY20128 | Canola | nucleus | 94.89 | 94.89 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 30.68 | 93.1 |
| AT3G15270.1 | Thale cress | nucleus | 80.68 | 78.45 |
| CDX98540 | Canola | nucleus | 78.98 | 77.65 |
| CDX97645 | Canola | nucleus | 78.41 | 77.09 |
| CDY24113 | Canola | nucleus | 60.23 | 65.84 |
| CDY61210 | Canola | nucleus | 65.91 | 64.8 |
| CDY25876 | Canola | nucleus | 64.2 | 64.2 |
| CDY50515 | Canola | nucleus | 56.25 | 63.06 |
| PGSC0003DMT400058753 | Potato | nucleus | 38.64 | 50.37 |
| PGSC0003DMT400076399 | Potato | nucleus | 38.64 | 50.0 |
| Solyc10g009080.2.1 | Tomato | nucleus | 37.5 | 48.89 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 38.64 | 48.57 |
| CDY17204 | Canola | nucleus | 38.64 | 47.89 |
| Solyc02g077920.2.1 | Tomato | nucleus | 36.93 | 47.79 |
| CDY27935 | Canola | nucleus | 39.77 | 47.62 |
| KRH21401 | Soybean | nucleus | 33.52 | 42.75 |
| CDY57212 | Canola | nucleus | 34.09 | 42.55 |
| KRH10909 | Soybean | nucleus | 32.95 | 42.03 |
| CDY37684 | Canola | nucleus | 33.52 | 41.84 |
| KRH50085 | Soybean | nucleus | 34.09 | 41.1 |
| KRH20415 | Soybean | nucleus | 32.39 | 40.14 |
| CDX79544 | Canola | nucleus | 34.09 | 32.09 |
| EER97257 | Sorghum | nucleus | 34.09 | 27.91 |
| Os07t0505200-01 | Rice | nucleus | 34.09 | 27.78 |
| Zm00001d021573_P001 | Maize | mitochondrion | 29.55 | 25.24 |
| Zm00001d006451_P001 | Maize | mitochondrion | 34.66 | 24.02 |
| KXG36284 | Sorghum | nucleus | 28.98 | 23.39 |
| CDY61750 | Canola | nucleus | 31.82 | 18.18 |
| CDX90071 | Canola | nucleus | 31.25 | 17.63 |
| CDX95958 | Canola | nucleus | 29.55 | 17.39 |
| CDY38043 | Canola | nucleus | 32.95 | 17.31 |
| CDX98259 | Canola | nucleus | 31.82 | 17.23 |
| CDY47656 | Canola | nucleus | 30.68 | 16.67 |
| CDY69014 | Canola | nucleus | 28.98 | 15.99 |
| CDY50300 | Canola | nucleus | 29.55 | 15.85 |
| CDX96251 | Canola | nucleus | 28.98 | 15.55 |
| CDX81606 | Canola | nucleus | 28.98 | 15.32 |
| CDY14818 | Canola | nucleus | 31.82 | 15.26 |
| CDX79888 | Canola | nucleus | 31.82 | 15.22 |
| CDX67715 | Canola | nucleus | 27.27 | 15.19 |
| CDY06881 | Canola | nucleus | 31.25 | 15.15 |
| CDY53504 | Canola | nucleus | 31.82 | 15.14 |
| CDY67700 | Canola | nucleus | 29.55 | 15.03 |
| CDY15132 | Canola | nucleus | 19.89 | 15.02 |
| CDY34028 | Canola | nucleus | 28.98 | 14.66 |
| CDX71667 | Canola | nucleus | 29.55 | 14.48 |
| CDY45826 | Canola | nucleus | 27.84 | 14.37 |
| CDY27612 | Canola | nucleus | 26.7 | 14.29 |
| CDX84872 | Canola | nucleus | 27.27 | 14.08 |
| CDY11816 | Canola | nucleus | 28.98 | 13.97 |
| CDX84927 | Canola | nucleus | 28.98 | 13.9 |
| CDX84928 | Canola | nucleus | 28.41 | 13.74 |
| CDY27611 | Canola | nucleus | 28.41 | 13.7 |
| CDY03913 | Canola | nucleus | 28.41 | 13.48 |
| CDY15713 | Canola | nucleus | 28.98 | 13.08 |
| CDY15712 | Canola | nucleus | 27.27 | 12.83 |
| CDY32959 | Canola | nucleus | 28.41 | 12.82 |
| CDY43604 | Canola | nucleus | 27.84 | 12.73 |
| CDY03914 | Canola | nucleus | 26.7 | 12.63 |
| CDY22356 | Canola | nucleus | 28.98 | 9.83 |
| CDY47812 | Canola | nucleus | 28.41 | 9.69 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078H0S4 | UniProt:A0A078H0S4 | EnsemblPlants:CDY32310 | ProteinID:CDY32310 |
| ProteinID:CDY32310.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00051803001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI0004EEF7D1 | SEG:seg | : | : | : |
Description
BnaC01g36290DBnaC01g36290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0S4]
Coordinates
chrLK032292:+:21188..22120
Molecular Weight (calculated)
20560.1 Da
IEP (calculated)
10.007
GRAVY (calculated)
-1.250
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSQRWSYV KDKAIISNLA EQEWENSMDG EEEDAGDEDK RKRVTERARD TNTDRVPPRL CQVHRCTANL TEAKQYYRRH KVCEVHAKAS AATVSGAKHR
101: FCQQCSRFHE LPEFDEAKRS CRMRLAGHNE RRRKVSGDSF GERSGRRGFR GQLIQTQERN NVDMKLPMAN TSFKRP
101: FCQQCSRFHE LPEFDEAKRS CRMRLAGHNE RRRKVSGDSF GERSGRRGFR GQLIQTQERN NVDMKLPMAN TSFKRP
001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
Arabidopsis Description
SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.