Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014599.1-P | Field mustard | nucleus | 95.45 | 97.35 |
| CDY47656 | Canola | nucleus | 87.01 | 82.72 |
| CDX67715 | Canola | nucleus | 68.18 | 66.46 |
| CDX98259 | Canola | nucleus | 69.16 | 65.54 |
| AT3G57920.1 | Thale cress | nucleus | 70.13 | 61.02 |
| CDY06881 | Canola | nucleus | 50.0 | 42.42 |
| CDX79888 | Canola | nucleus | 50.65 | 42.39 |
| CDY14818 | Canola | nucleus | 50.0 | 41.96 |
| CDY53504 | Canola | nucleus | 50.32 | 41.89 |
| CDY17204 | Canola | nucleus | 17.86 | 38.73 |
| CDY57212 | Canola | nucleus | 17.53 | 38.3 |
| CDY27935 | Canola | nucleus | 17.86 | 37.41 |
| CDY37684 | Canola | nucleus | 16.88 | 36.88 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 44.48 | 36.15 |
| CDY50515 | Canola | nucleus | 18.18 | 35.67 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 32.14 | 34.74 |
| KRH67040 | Soybean | nucleus | 40.58 | 34.06 |
| KRG95361 | Soybean | nucleus | 39.29 | 33.7 |
| CDY24113 | Canola | nucleus | 17.53 | 33.54 |
| PGSC0003DMT400029751 | Potato | nucleus | 39.61 | 32.8 |
| Solyc10g078700.1.1 | Tomato | nucleus | 39.61 | 32.8 |
| CDY20128 | Canola | nucleus | 18.51 | 32.39 |
| CDY25876 | Canola | nucleus | 18.51 | 32.39 |
| CDY32310 | Canola | nucleus | 18.18 | 31.82 |
| CDY61210 | Canola | nucleus | 18.18 | 31.28 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 34.42 | 31.09 |
| CDX97645 | Canola | nucleus | 17.86 | 30.73 |
| KRH38141 | Soybean | nucleus, plastid | 37.01 | 30.56 |
| KRH71914 | Soybean | nucleus, plastid | 35.06 | 30.17 |
| CDX98540 | Canola | nucleus | 17.53 | 30.17 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 32.79 | 29.45 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 31.49 | 28.03 |
| CDX79544 | Canola | nucleus | 16.88 | 27.81 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 30.52 | 27.33 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 30.52 | 26.33 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 33.77 | 25.3 |
| CDX95958 | Canola | nucleus | 24.35 | 25.08 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.48 | 24.39 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 30.52 | 24.23 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 28.9 | 24.12 |
| Zm00001d006028_P001 | Maize | nucleus | 29.87 | 24.02 |
| Zm00001d020941_P001 | Maize | nucleus | 28.9 | 23.55 |
| CDY69014 | Canola | nucleus | 24.35 | 23.51 |
| CDX96251 | Canola | nucleus | 24.35 | 22.87 |
| CDY50300 | Canola | nucleus | 24.35 | 22.87 |
| CDX81606 | Canola | nucleus | 24.68 | 22.82 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 29.22 | 22.73 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 28.25 | 22.54 |
| EER99092 | Sorghum | nucleus | 28.25 | 22.42 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 27.92 | 22.34 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 29.55 | 22.3 |
| CDY45826 | Canola | nucleus | 24.68 | 22.29 |
| CDX84872 | Canola | nucleus | 24.68 | 22.29 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 29.55 | 22.14 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 27.6 | 22.02 |
| Zm00001d031451_P001 | Maize | nucleus | 28.57 | 21.84 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 29.22 | 21.63 |
| Os08t0509600-01 | Rice | nucleus | 29.22 | 21.58 |
| EES14266 | Sorghum | nucleus | 28.57 | 21.52 |
| CDY43604 | Canola | nucleus | 26.62 | 21.3 |
| Os09t0491532-01 | Rice | nucleus | 22.08 | 21.05 |
| CDY32959 | Canola | nucleus | 26.62 | 21.03 |
| CDY34028 | Canola | nucleus | 23.38 | 20.69 |
| CDX71667 | Canola | nucleus | 24.03 | 20.61 |
| CDX90071 | Canola | nucleus | 20.78 | 20.51 |
| Zm00001d052890_P001 | Maize | nucleus | 26.95 | 20.34 |
| CDY67700 | Canola | nucleus | 22.73 | 20.23 |
| CDY27612 | Canola | nucleus | 21.43 | 20.06 |
| CDY38043 | Canola | nucleus | 21.1 | 19.4 |
| CDX84927 | Canola | nucleus | 23.05 | 19.35 |
| CDX84928 | Canola | nucleus | 22.73 | 19.23 |
| CDY27611 | Canola | nucleus | 22.73 | 19.18 |
| CDY11816 | Canola | nucleus | 22.73 | 19.18 |
| CDY15132 | Canola | nucleus | 14.29 | 18.88 |
| CDY03913 | Canola | nucleus | 22.4 | 18.6 |
| CDY15713 | Canola | nucleus | 23.05 | 18.21 |
| CDY15712 | Canola | nucleus | 22.08 | 18.18 |
| CDY03914 | Canola | nucleus | 21.75 | 18.01 |
| CDY47812 | Canola | nucleus | 25.97 | 15.5 |
| CDY22356 | Canola | nucleus | 25.97 | 15.41 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.62 | 8.62 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078J9J3 | UniProt:A0A078J9J3 | EnsemblPlants:CDY61750 | ProteinID:CDY61750 |
| ProteinID:CDY61750.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00034335001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EDC5EA | SEG:seg | : | : |
Description
BnaA04g27550DBnaA04g27550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9J3]
Coordinates
chrLK034036:-:8184..9917
Molecular Weight (calculated)
34418.2 Da
IEP (calculated)
9.285
GRAVY (calculated)
-0.738
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLMGSGQN RTETVGSSSR ESSSLSGGLR IGQKIYFEDG SGSGKDRANK YRKTTTGARC QVEGCKMDLS NAKTYYSRHK VCGIHSKSSK VTVSGLHQRF
101: CQQCSRFHQL CEFDLEKRSC RRRLACHNER RRKPQATRAT LFTSGLSRIS PSLYGSVLGD PSWDRSVFSQ GSSRFSITYP EMVNNSSTDS SCALSLLSNS
201: NTTQQQQQQL QTSTNAYLMD AERVKMAQSP PVSVHNQYSN QTWEFMSGEK SNSPCVSSPA LRLNQISEPD DELQFLTSNG ATMGGFELNL QQQVLRQYSS
301: TQHFTWPL
101: CQQCSRFHQL CEFDLEKRSC RRRLACHNER RRKPQATRAT LFTSGLSRIS PSLYGSVLGD PSWDRSVFSQ GSSRFSITYP EMVNNSSTDS SCALSLLSNS
201: NTTQQQQQQL QTSTNAYLMD AERVKMAQSP PVSVHNQYSN QTWEFMSGEK SNSPCVSSPA LRLNQISEPD DELQFLTSNG ATMGGFELNL QQQVLRQYSS
301: TQHFTWPL
001: MELLMCSGQA ESGGSSSTES SSLSGGLRFG QKIYFEDGSG SRSKNRVNTV RKSSTTARCQ VEGCRMDLSN VKAYYSRHKV CCIHSKSSKV IVSGLHQRFC
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
101: QQCSRFHQLS EFDLEKRSCR RRLACHNERR RKPQPTTALF TSHYSRIAPS LYGNPNAAMI KSVLGDPTAW STARSVMQRP GPWQINPVRE THPHMNVLSH
201: GSSSFTTCPE MINNNSTDSS CALSLLSNSY PIHQQQLQTP TNTWRPSSGF DSMISFSDKV TMAQPPPIST HQPPISTHQQ YLSQTWEVIA GEKSNSHYMS
301: PVSQISEPAD FQISNGTTMG GFELYLHQQV LKQYMEPENT RAYDSSPQHF NWSL
Arabidopsis Description
SPL15Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.