Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27370.1 | CDY55037 | AT1G66350.1 | 22942378 |
| AT1G27370.1 | CDY70426 | AT1G66350.1 | 22942378 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030040.1-P | Field mustard | nucleus | 99.74 | 99.74 |
| CDY03913 | Canola | nucleus | 90.77 | 95.42 |
| CDY27611 | Canola | nucleus | 75.64 | 80.82 |
| CDX84928 | Canola | nucleus | 73.85 | 79.12 |
| CDY03914 | Canola | nucleus | 68.72 | 72.04 |
| AT1G27370.1 | Thale cress | nucleus | 72.82 | 71.72 |
| CDY15712 | Canola | nucleus | 68.72 | 71.66 |
| CDY27612 | Canola | nucleus | 60.26 | 71.43 |
| CDY67700 | Canola | nucleus | 62.82 | 70.81 |
| CDX84927 | Canola | nucleus | 64.62 | 68.66 |
| CDY11816 | Canola | nucleus | 64.1 | 68.49 |
| Os02t0139400-01 | Rice | nucleus | 28.97 | 40.07 |
| CDY27935 | Canola | nucleus | 13.85 | 36.73 |
| CDY17204 | Canola | nucleus | 13.33 | 36.62 |
| CDY57212 | Canola | nucleus | 13.08 | 36.17 |
| CDY37684 | Canola | nucleus | 13.08 | 36.17 |
| CDY32959 | Canola | nucleus | 35.38 | 35.38 |
| CDY43604 | Canola | nucleus | 34.36 | 34.81 |
| KRG97402 | Soybean | nucleus | 37.95 | 34.18 |
| CDY50515 | Canola | nucleus | 13.59 | 33.76 |
| KRH31506 | Soybean | nucleus | 38.21 | 33.63 |
| CDY24113 | Canola | nucleus | 13.59 | 32.92 |
| Os02t0174100-02 | Rice | nucleus | 21.03 | 32.67 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 33.85 | 31.73 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 27.95 | 31.14 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 35.9 | 30.57 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 36.41 | 30.54 |
| CDY61210 | Canola | nucleus | 13.85 | 30.17 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 33.85 | 30.14 |
| CDX97645 | Canola | nucleus | 13.59 | 29.61 |
| CDY25876 | Canola | nucleus | 13.33 | 29.55 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 34.36 | 29.52 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 24.62 | 29.27 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 24.36 | 29.05 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 34.87 | 29.0 |
| CDY32310 | Canola | nucleus | 13.08 | 28.98 |
| CDY20128 | Canola | nucleus | 13.08 | 28.98 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 24.1 | 28.92 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 25.64 | 28.9 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 34.36 | 28.88 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.1 | 28.83 |
| CDX98540 | Canola | nucleus | 13.08 | 28.49 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 31.54 | 28.41 |
| Zm00001d015410_P002 | Maize | nucleus | 24.1 | 28.31 |
| CDY47812 | Canola | nucleus | 37.44 | 28.29 |
| EES04609 | Sorghum | nucleus | 24.36 | 28.19 |
| Zm00001d014698_P001 | Maize | nucleus | 31.54 | 28.02 |
| OQU77017 | Sorghum | nucleus | 31.54 | 27.95 |
| CDX79544 | Canola | nucleus | 13.33 | 27.81 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 33.59 | 27.7 |
| CDY22356 | Canola | nucleus | 36.67 | 27.55 |
| Zm00001d053775_P001 | Maize | nucleus | 23.33 | 27.49 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 33.33 | 27.48 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 33.33 | 27.37 |
| EES04495 | Sorghum | nucleus | 33.59 | 27.29 |
| Os06t0703500-02 | Rice | nucleus | 32.82 | 26.95 |
| GSMUA_Achr10P... | Banana | nucleus | 34.62 | 26.79 |
| GSMUA_Achr10P... | Banana | nucleus | 33.08 | 26.49 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 33.85 | 26.04 |
| Os06t0663500-00 | Rice | nucleus | 22.82 | 25.95 |
| Zm00001d053890_P003 | Maize | nucleus | 31.54 | 25.52 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 33.85 | 24.86 |
| CDX95958 | Canola | nucleus | 18.97 | 24.75 |
| CDY69014 | Canola | nucleus | 19.23 | 23.51 |
| CDY15132 | Canola | nucleus | 13.85 | 23.18 |
| CDY50300 | Canola | nucleus | 19.49 | 23.17 |
| CDX81606 | Canola | nucleus | 19.74 | 23.12 |
| CDX98259 | Canola | nucleus | 19.23 | 23.08 |
| CDY61750 | Canola | nucleus | 18.21 | 23.05 |
| CDX96251 | Canola | nucleus | 19.23 | 22.87 |
| CDX79888 | Canola | nucleus | 21.54 | 22.83 |
| CDX90071 | Canola | nucleus | 18.21 | 22.76 |
| CDY06881 | Canola | nucleus | 21.03 | 22.59 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 30.51 | 22.58 |
| CDY53504 | Canola | nucleus | 21.28 | 22.43 |
| CDY34028 | Canola | nucleus | 20.0 | 22.41 |
| CDY45826 | Canola | nucleus | 19.49 | 22.29 |
| CDY14818 | Canola | nucleus | 20.77 | 22.07 |
| CDX71667 | Canola | nucleus | 20.26 | 22.01 |
| CDX84872 | Canola | nucleus | 19.23 | 21.99 |
| CDY47656 | Canola | nucleus | 18.21 | 21.91 |
| CDX67715 | Canola | nucleus | 17.44 | 21.52 |
| CDY38043 | Canola | nucleus | 17.95 | 20.9 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.77 | 5.17 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078FTQ2 | UniProt:A0A078FTQ2 | EnsemblPlants:CDY15713 | ProteinID:CDY15713 |
| ProteinID:CDY15713.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00089937001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EEF40B | SEG:seg | : | : |
Description
BnaA07g08840DBnaA07g08840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTQ2]
Coordinates
chrLK032056:-:706933..709534
Molecular Weight (calculated)
43641.8 Da
IEP (calculated)
8.375
GRAVY (calculated)
-0.772
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETE KGEGIESMFP CFNGLERVSN CSTTSLWHTP VSKSSQSTST NSSSPGVKQR MLASESSPGD
101: SCCNIQVKAS VASAESDLSL KLGKRTYSEE LWGRSNNNDI SAVSVKLLTP PSVVSRKKSK SSCGQSMQVP RCQIDGCELD LSSAKDYHRK HRVCENHSKC
201: PKVTVSGIER RFCQQCSRFH AVSEFDETKR SCRKRLSHHN ARRRKPQGVF PFNPDRVYDR RQHTNMLWNG LSLDTRSEEK FAWETTYDIK PTQTESGFTL
301: SFQRGNGSEQ QLFASSNHSY STYQTSGGLS AGKPKFQLHG QGVGEYSGVL HESQEFHRAL SLLSTSSSDH LVQPHAQPLS LLFSYDGVPK
101: SCCNIQVKAS VASAESDLSL KLGKRTYSEE LWGRSNNNDI SAVSVKLLTP PSVVSRKKSK SSCGQSMQVP RCQIDGCELD LSSAKDYHRK HRVCENHSKC
201: PKVTVSGIER RFCQQCSRFH AVSEFDETKR SCRKRLSHHN ARRRKPQGVF PFNPDRVYDR RQHTNMLWNG LSLDTRSEEK FAWETTYDIK PTQTESGFTL
301: SFQRGNGSEQ QLFASSNHSY STYQTSGGLS AGKPKFQLHG QGVGEYSGVL HESQEFHRAL SLLSTSSSDH LVQPHAQPLS LLFSYDGVPK
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
Arabidopsis Description
SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.