Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P05360_001 | Banana | nucleus | 68.78 | 67.89 |
| GSMUA_Achr10P... | Banana | nucleus | 71.18 | 64.68 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 64.19 | 55.79 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 53.71 | 54.19 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 50.87 | 53.2 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 49.13 | 51.96 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 38.86 | 50.86 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 37.34 | 49.42 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 44.76 | 49.28 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 49.78 | 48.61 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 47.02 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 47.38 | 45.49 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 45.85 | 45.16 |
| KRG97402 | Soybean | nucleus | 38.86 | 41.11 |
| Bra033671.1-P | Field mustard | nucleus | 32.31 | 40.88 |
| KRH31506 | Soybean | nucleus | 39.08 | 40.41 |
| Solyc05g015510.2.1 | Tomato | nucleus | 39.74 | 39.31 |
| PGSC0003DMT400068752 | Potato | nucleus | 32.75 | 38.96 |
| PGSC0003DMT400084734 | Potato | nucleus | 39.52 | 38.92 |
| Bra027478.1-P | Field mustard | nucleus | 32.75 | 38.46 |
| CDY32959 | Canola | nucleus | 32.75 | 38.46 |
| CDY43604 | Canola | nucleus | 32.31 | 38.44 |
| Solyc04g045560.2.1 | Tomato | nucleus | 29.26 | 38.29 |
| AT5G43270.1 | Thale cress | nucleus | 34.5 | 37.71 |
| CDY27611 | Canola | nucleus | 29.91 | 37.53 |
| Bra032822.1-P | Field mustard | nucleus | 29.69 | 37.26 |
| CDX84928 | Canola | nucleus | 29.48 | 37.09 |
| CDY03913 | Canola | nucleus | 29.69 | 36.66 |
| Bra030040.1-P | Field mustard | nucleus | 30.79 | 36.15 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 12.01 | 35.95 |
| CDY15713 | Canola | nucleus | 30.57 | 35.9 |
| CDY27612 | Canola | nucleus | 25.76 | 35.87 |
| CDY15712 | Canola | nucleus | 29.26 | 35.83 |
| CDX84927 | Canola | nucleus | 28.6 | 35.69 |
| Bra032823.1-P | Field mustard | nucleus | 25.55 | 35.67 |
| CDY11816 | Canola | nucleus | 28.38 | 35.62 |
| Bra030041.1-P | Field mustard | nucleus | 29.04 | 35.56 |
| CDY03914 | Canola | nucleus | 28.6 | 35.22 |
| AT1G27370.1 | Thale cress | nucleus | 30.13 | 34.85 |
| CDY67700 | Canola | nucleus | 26.2 | 34.68 |
| AT1G27360.1 | Thale cress | nucleus | 29.69 | 34.61 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 13.76 | 33.69 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 13.76 | 33.69 |
| Bra010949.1-P | Field mustard | nucleus | 26.86 | 33.61 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 20.52 | 32.98 |
| CDY22356 | Canola | nucleus | 35.37 | 31.21 |
| CDY47812 | Canola | nucleus | 35.15 | 31.2 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 16.38 | 29.41 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 13.32 | 28.37 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 20.74 | 27.62 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 20.52 | 27.57 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 21.62 | 26.83 |
| GSMUA_Achr10P... | Banana | nucleus | 13.1 | 26.32 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 15.5 | 26.1 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 17.9 | 25.79 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 19.43 | 25.72 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 19.21 | 25.66 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 15.07 | 25.18 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 17.47 | 25.08 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 19.43 | 24.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.21 | 24.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.43 | 23.92 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 18.56 | 23.61 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 19.21 | 23.59 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 16.81 | 23.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.9 | 23.43 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 20.09 | 23.41 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 19.65 | 23.2 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 17.25 | 22.77 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 14.41 | 22.68 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 12.01 | 22.36 |
| GSMUA_Achr11P... | Banana | nucleus | 20.09 | 22.17 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 19.65 | 21.9 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 17.47 | 21.68 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 19.43 | 21.55 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 16.59 | 21.47 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 17.9 | 21.47 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr9G14160_001 |
| EnsemblPlants:GSMUA_Achr9P14160_001 | EnsemblPlants:GSMUA_Achr9T14160_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0U074 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0002948B14 | SEG:seg | : | : | : | : |
Description
Putative Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14160_001]
Coordinates
chr9:-:9198031..9203102
Molecular Weight (calculated)
50118.7 Da
IEP (calculated)
9.280
GRAVY (calculated)
-0.562
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWVAKNPFQ WDWETLDLFC GKESEIYKTA QEPELKIEGG MGICNGFVCS SGGGASSVLQ LGNRSSKSSI SASIDSLSKA EKGNSDFNYD SAERDVNSSS
101: KIILARVEGF GTSPVPLAAG RPKEPVTGLK LGRTFFEDGG AENNIKSSSS SASMILSTAV AKKSRVSPQN LQSPKCQVEG CNVDLTTAKD YHRKHRVCES
201: HSKSPKVIVA GRERRFCQQC SRFHGLSEFD QKKRSCRRRL SDHNARRRKP QPATISFSSS RLSSSYYDGR HHMNLVFGGN PLGHGMTSSP LEDDPSSFKL
301: IQPKHSWIKS NKAGDVNGQL QFSSTCQTHN ISTLHHDLNR LLPFKGTTAE VLNQGLEAPV FASSLGGAPD LRRALSLLSN NSWSSANPGP SSNVKFVNTH
401: PAANTIDSTA GFLQVEQPIG PQSTMLPFNL QNHNGQFQEF QLLKAPYQAS FFDFTQIH
101: KIILARVEGF GTSPVPLAAG RPKEPVTGLK LGRTFFEDGG AENNIKSSSS SASMILSTAV AKKSRVSPQN LQSPKCQVEG CNVDLTTAKD YHRKHRVCES
201: HSKSPKVIVA GRERRFCQQC SRFHGLSEFD QKKRSCRRRL SDHNARRRKP QPATISFSSS RLSSSYYDGR HHMNLVFGGN PLGHGMTSSP LEDDPSSFKL
301: IQPKHSWIKS NKAGDVNGQL QFSSTCQTHN ISTLHHDLNR LLPFKGTTAE VLNQGLEAPV FASSLGGAPD LRRALSLLSN NSWSSANPGP SSNVKFVNTH
401: PAANTIDSTA GFLQVEQPIG PQSTMLPFNL QNHNGQFQEF QLLKAPYQAS FFDFTQIH
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.