Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P36010_001 | Banana | nucleus | 68.28 | 70.78 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 54.19 | 53.71 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 51.76 | 50.65 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 46.7 | 48.96 |
| GSMUA_Achr10P... | Banana | nucleus | 53.96 | 48.61 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 37.44 | 48.57 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 46.61 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 35.24 | 46.24 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 42.07 | 45.91 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 47.36 | 45.84 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 45.15 | 42.98 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 43.61 | 42.58 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 47.8 | 41.18 |
| KRG97402 | Soybean | nucleus | 36.12 | 37.88 |
| PGSC0003DMT400084734 | Potato | nucleus | 37.44 | 36.56 |
| KRH31506 | Soybean | nucleus | 35.24 | 36.12 |
| Solyc05g015510.2.1 | Tomato | nucleus | 36.78 | 36.07 |
| Solyc04g045560.2.1 | Tomato | nucleus | 27.75 | 36.0 |
| Bra033671.1-P | Field mustard | nucleus | 28.63 | 35.91 |
| CDY27612 | Canola | nucleus | 25.99 | 35.87 |
| Bra032823.1-P | Field mustard | nucleus | 25.77 | 35.67 |
| CDY43604 | Canola | nucleus | 30.18 | 35.58 |
| Bra027478.1-P | Field mustard | nucleus | 30.4 | 35.38 |
| CDY32959 | Canola | nucleus | 30.4 | 35.38 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 11.89 | 35.29 |
| PGSC0003DMT400068752 | Potato | nucleus | 29.74 | 35.06 |
| CDY03913 | Canola | nucleus | 28.63 | 35.04 |
| CDY15712 | Canola | nucleus | 28.85 | 35.03 |
| CDX84927 | Canola | nucleus | 28.19 | 34.88 |
| AT5G43270.1 | Thale cress | nucleus | 32.16 | 34.84 |
| Bra032822.1-P | Field mustard | nucleus | 27.97 | 34.79 |
| CDY27611 | Canola | nucleus | 27.97 | 34.79 |
| Bra030041.1-P | Field mustard | nucleus | 28.63 | 34.76 |
| CDX84928 | Canola | nucleus | 27.75 | 34.62 |
| Bra030040.1-P | Field mustard | nucleus | 29.74 | 34.62 |
| CDY03914 | Canola | nucleus | 28.19 | 34.41 |
| CDY15713 | Canola | nucleus | 29.52 | 34.36 |
| CDY67700 | Canola | nucleus | 25.77 | 33.81 |
| AT1G27370.1 | Thale cress | nucleus | 29.07 | 33.33 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 13.66 | 33.16 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 13.66 | 33.16 |
| CDY11816 | Canola | nucleus | 26.43 | 32.88 |
| AT1G27360.1 | Thale cress | nucleus | 28.41 | 32.82 |
| Bra010949.1-P | Field mustard | nucleus | 26.43 | 32.79 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 18.94 | 30.18 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 16.52 | 29.41 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 13.66 | 28.84 |
| GSMUA_Achr10P... | Banana | nucleus | 14.32 | 28.51 |
| CDY22356 | Canola | nucleus | 31.94 | 27.94 |
| CDY47812 | Canola | nucleus | 31.28 | 27.52 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 16.3 | 27.21 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 16.3 | 27.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.48 | 26.35 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 18.94 | 25.22 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 17.62 | 25.08 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 16.96 | 24.21 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 18.28 | 23.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.38 | 23.66 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 16.96 | 23.48 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 17.62 | 23.32 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 17.62 | 23.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.62 | 22.86 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 18.06 | 22.78 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 17.84 | 22.69 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 20.48 | 22.52 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 20.26 | 22.38 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 14.32 | 22.34 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 17.4 | 22.32 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 18.06 | 22.22 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 17.84 | 21.95 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 16.74 | 21.9 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 17.84 | 21.72 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 18.72 | 21.63 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 18.06 | 21.47 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 17.62 | 20.62 |
| GSMUA_Achr11P... | Banana | nucleus | 18.06 | 19.76 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 10.13 | 18.7 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr5G22630_001 |
| EnsemblPlants:GSMUA_Achr5P22630_001 | EnsemblPlants:GSMUA_Achr5T22630_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0T0T8 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF24 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0002955080 | SEG:seg | : | : | : | : |
Description
Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr5G22630_001]
Coordinates
chr5:+:24617100..24620566
Molecular Weight (calculated)
49893.5 Da
IEP (calculated)
8.418
GRAVY (calculated)
-0.507
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWTSKMPFH FDWETLAPFN GEETEISEPA QELKSKIGSG VAMGNGSVYS SSGVLCSSSE MGNCLSKSSI SASVDSSSKA MKRLPEVDFE SVGGFLVHQN
101: KNKDLARVHD FRTSHAVESA EGIKESVMGL KLGKRTYFED PCAGSNIKSP SSSASFTPST TSVKKSRVYQ QSLLSSYCQV EGCNIDLSTA KDYHRKHRVC
201: ESHSKSPKVV VAGQDRRFCQ QCSRFHALSE FDQKKRSCRR RLSDHNARRR KPQLETISFN SSKLSTSYYD KQQAGLVFGR PPFSQMTTMA SSIWDNPSSF
301: KLTQTEGCWI KSSKTGGING QLHFPNYGNL NTVSTVGHNM DSLLPFKSVT ADVLNQDVTA AFNLDGAPDL RCACSLLSTE SRVPPNARPA PSVQFVYTYN
401: SDAAHPAMHT FNTTQDQQLL EQVLPFSSGG QFQESLLFKS SLGMGFLDPS SQLG
101: KNKDLARVHD FRTSHAVESA EGIKESVMGL KLGKRTYFED PCAGSNIKSP SSSASFTPST TSVKKSRVYQ QSLLSSYCQV EGCNIDLSTA KDYHRKHRVC
201: ESHSKSPKVV VAGQDRRFCQ QCSRFHALSE FDQKKRSCRR RLSDHNARRR KPQLETISFN SSKLSTSYYD KQQAGLVFGR PPFSQMTTMA SSIWDNPSSF
301: KLTQTEGCWI KSSKTGGING QLHFPNYGNL NTVSTVGHNM DSLLPFKSVT ADVLNQDVTA AFNLDGAPDL RCACSLLSTE SRVPPNARPA PSVQFVYTYN
401: SDAAHPAMHT FNTTQDQQLL EQVLPFSSGG QFQESLLFKS SLGMGFLDPS SQLG
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.