CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	EER93592	AT1G14920.1	22942378
AT1G27360.1	EER93592	AT2G01570.1	22942378
AT1G27370.1	EER93592	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015410_P002	Maize	nucleus	87.83	89.16
HORVU6Hr1G031450.6	Barley	nucleus	69.73	72.09
TraesCS6B01G183400.1	Wheat	nucleus	69.73	71.87
TraesCS6D01G145200.1	Wheat	nucleus	69.14	71.69
TraesCS6A01G155300.1	Wheat	nucleus	69.44	71.34
Os06t0663500-00	Rice	nucleus	53.12	52.19
GSMUA_Achr5P21990_001	Banana	nucleus	37.69	29.33
EER97257	Sorghum	nucleus	18.69	29.3
VIT_01s0010g03710.t01	Wine grape	nucleus	40.65	28.72
VIT_11s0065g00170.t01	Wine grape	nucleus	39.47	28.6
Solyc04g045560.2.1	Tomato	nucleus	28.78	27.71
KRG97402	Soybean	nucleus	35.61	27.71
PGSC0003DMT400068752	Potato	nucleus	31.45	27.53
KRH31506	Soybean	nucleus	35.91	27.31
OQU77017	Sorghum	nucleus	34.42	26.36
Solyc05g015510.2.1	Tomato	nucleus	36.2	26.35
Bra033671.1-P	Field mustard	nucleus	28.19	26.24
PGSC0003DMT400084734	Potato	nucleus	35.91	26.02
Bra032823.1-P	Field mustard	nucleus	25.22	25.91
CDY27612	Canola	nucleus	25.22	25.84
CDY03913	Canola	nucleus	28.19	25.61
CDX84928	Canola	nucleus	27.6	25.55
Bra032822.1-P	Field mustard	nucleus	27.6	25.48
CDY27611	Canola	nucleus	27.6	25.48
CDY32959	Canola	nucleus	29.38	25.38
Bra027478.1-P	Field mustard	nucleus	29.38	25.38
AT5G43270.1	Thale cress	nucleus	31.45	25.3
CDX84927	Canola	nucleus	27.3	25.07
CDY43604	Canola	nucleus	28.49	24.94
EES04495	Sorghum	nucleus	35.31	24.79
Bra030040.1-P	Field mustard	nucleus	28.49	24.62
AT1G27370.1	Thale cress	nucleus	28.78	24.49
CDY03914	Canola	nucleus	27.0	24.46
CDY15713	Canola	nucleus	28.19	24.36
Bra030041.1-P	Field mustard	nucleus	27.0	24.33
CDY15712	Canola	nucleus	27.0	24.33
CDY67700	Canola	nucleus	24.63	23.99
KXG36284	Sorghum	nucleus	15.13	23.39
Bra010949.1-P	Field mustard	nucleus	24.93	22.95
CDY11816	Canola	nucleus	24.63	22.74
AT1G27360.1	Thale cress	nucleus	26.11	22.39
EES01979	Sorghum	nucleus	24.93	20.84
CDY47812	Canola	nucleus	31.75	20.74
CDY22356	Canola	nucleus	31.75	20.62
EES11579	Sorghum	nucleus	24.33	20.5
EER97011	Sorghum	nucleus	28.19	20.47
EER99092	Sorghum	nucleus	23.44	20.36
EES11232	Sorghum	nucleus	25.22	20.33
KXG25534	Sorghum	nucleus	27.3	20.18
EES14266	Sorghum	nucleus	23.74	19.56
EER88765	Sorghum	nucleus	21.07	15.99
OQU84482	Sorghum	nucleus	20.18	15.28

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:8076126	UniProt:C5XW64	EnsemblPlants:EES04609	ProteinID:EES04609
ProteinID:EES04609.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF7	InterPro:SBP_dom	InterPro:SBP_sf
EnsemblPlantsGene:SORBI_3004G058900	SUPFAM:SSF103612	unigene:Sbi.20514	UniParc:UPI0001A855EC	RefSeq:XP_002451633.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:4731581..4735049

Molecular Weight (calculated)

36776.9 Da

IEP (calculated)

9.014

GRAVY (calculated)

-0.713

Length

337 amino acids

Sequence
(BLAST)

001: MEWTAPKPAS SPSSPPLLWD WGDHAATGSG SSSGDAPARR GAGKEREAKR ARGEDGGGGA EVRCQVEGCG LDLTRVKDYH RKHRVCEAHT KSPRVIVAGQ
101: ERRFCQQCSR FHALSEFDQK KRSCRRRLSD HNARRRKPQP DAFTFASARL PSSLFDDRRQ ISFVWNKAPV SHVRPFTSPW DSSSDLKLPH AKETREVSTK
201: VGTITGQVHL DKSHMSNAIP TLSHGKDEPW PMKGPDMSIT ASKFDGAPDL QRALSLLSVG ACGLPDPVHQ TSCVIQFTGA SENSGDLHLS HGGNSGPASC
301: ADGQHIAAQS QSQLVRFTMD TSNNVYEPSF FGVNQIN

Best Arabidopsis Sequence Match ( AT5G43270.1 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.