CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026175_P001	Maize	nucleus	69.14	72.43
HORVU2Hr1G097580.1	Barley	nucleus	32.78	65.55
HORVU2Hr1G097610.1	Barley	nucleus	30.38	62.56
TraesCS2A01G413900.1	Wheat	nucleus	51.91	62.18
Os04t0551500-01	Rice	nucleus	53.11	61.67
TraesCS2D01G410700.1	Wheat	nucleus	51.44	60.56
TraesCS2B01G432700.1	Wheat	nucleus	50.72	60.06
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	32.3	46.39
KRG88952	Soybean	nucleus	24.64	45.98
GSMUA_Achr4P26940_001	Banana	nucleus	34.21	41.21
EER97257	Sorghum	nucleus	18.42	35.81
KRH75287	Soybean	nucleus	26.79	32.56
KRH66613	Soybean	nucleus	25.36	30.99
VIT_15s0021g02290.t01	Wine grape	nucleus	29.43	30.83
KRH48746	Soybean	nucleus	25.12	30.7
KXG36284	Sorghum	nucleus	15.55	29.82
EES04609	Sorghum	nucleus	20.33	25.22
EES01979	Sorghum	nucleus	23.68	24.57
EER99092	Sorghum	nucleus	22.73	24.48
EES14266	Sorghum	nucleus	23.92	24.45
KXG25534	Sorghum	nucleus	23.45	21.49
EER97011	Sorghum	nucleus	23.45	21.12
EES11579	Sorghum	nucleus	19.62	20.5
EER88765	Sorghum	nucleus	20.81	19.59
OQU77017	Sorghum	nucleus	19.86	18.86
EES04495	Sorghum	nucleus	21.05	18.33
OQU84482	Sorghum	nucleus	19.14	17.98

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:8055967	UniProt:C5YDH8	EnsemblPlants:EES11232	ProteinID:EES11232
ProteinID:EES11232.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF15	InterPro:SBP_dom	InterPro:SBP_sf
EnsemblPlantsGene:SORBI_3006G171000	SUPFAM:SSF103612	UniParc:UPI0001A86FD1	RefSeq:XP_002446904.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:52741861..52745908

Molecular Weight (calculated)

42663.8 Da

IEP (calculated)

9.512

GRAVY (calculated)

-0.406

Length

418 amino acids

Sequence
(BLAST)

001: MEGNGGAGGG SGSAAPPWDL AMHWAPSAGS SYPQQPLALR PGGVPSSQLQ LLHQQQQQQQ QELTCLKLGK RPACCWAGAA LGSQVVAAQA GAGLPHHLHG
101: NGGGAAAGCG GGASGKAAEG KRKEKQAAAA APGAAAVPRC QVEGCHVALA DAKDYHRRHK VCEAHSKAPR VVVLGAEQRF CQQCSRFHAI SEFDEAKRSC
201: RRRLAGHNER RRKSNASEAM ARGAAHPHGV TAFGHGFLPP CGGLSGSSAG ALSLLSSARS GATSAAPWQV TTSDISARSS AALDDLIAEN RAALLAWQYF
301: SDRSSSAPGR HFASSSSTAT GCALPPADDQ HAAASWRPHP HSGVGGGRHH MAPPGVWHTT LDLMQTASSA APATSTGAPF RPVPERAGAR PRGKSKDGDD
401: ASGCSLDAWA PAGGARVL

Best Arabidopsis Sequence Match ( AT1G27370.6 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKG

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.