Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015451_P001 | Maize | nucleus | 82.92 | 83.67 |
| Zm00001d053756_P001 | Maize | nucleus | 62.7 | 68.72 |
| Os02t0177300-00 | Rice | nucleus | 58.65 | 55.77 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 54.61 | 54.98 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 53.71 | 53.35 |
| TraesCS6D01G142100.1 | Wheat | nucleus | 54.16 | 53.32 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 52.58 | 47.66 |
| EER88765 | Sorghum | nucleus | 45.62 | 45.72 |
| Bra032662.1-P | Field mustard | nucleus | 14.61 | 41.14 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 20.67 | 36.08 |
| GSMUA_Achr10P... | Banana | nucleus | 18.2 | 35.53 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 20.45 | 33.46 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 20.0 | 32.48 |
| PGSC0003DMT400066955 | Potato | nucleus | 20.9 | 30.79 |
| PGSC0003DMT400074976 | Potato | nucleus | 20.22 | 30.72 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 20.9 | 30.59 |
| Solyc01g090730.2.1 | Tomato | nucleus | 20.45 | 30.43 |
| Solyc10g018780.1.1 | Tomato | nucleus | 20.0 | 30.38 |
| CDX90071 | Canola | nucleus | 21.12 | 30.13 |
| KRH66611 | Soybean | nucleus | 22.7 | 30.06 |
| Bra033221.1-P | Field mustard | nucleus | 22.02 | 29.88 |
| EER97257 | Sorghum | nucleus | 14.38 | 29.77 |
| KRH48747 | Soybean | nucleus | 22.47 | 29.59 |
| KRH75288 | Soybean | nucleus | 18.88 | 29.27 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.15 | 29.1 |
| CDY15132 | Canola | nucleus | 15.06 | 28.76 |
| CDY38043 | Canola | nucleus | 21.35 | 28.36 |
| KRH07602 | Soybean | nucleus | 13.71 | 28.24 |
| AT1G02065.1 | Thale cress | nucleus | 20.9 | 27.93 |
| KXG36284 | Sorghum | nucleus | 12.58 | 25.69 |
| EES11579 | Sorghum | nucleus | 21.12 | 23.5 |
| EES01979 | Sorghum | nucleus | 18.88 | 20.84 |
| EER97011 | Sorghum | nucleus | 21.35 | 20.47 |
| EES04609 | Sorghum | nucleus | 15.28 | 20.18 |
| EES11232 | Sorghum | nucleus | 17.98 | 19.14 |
| KXG25534 | Sorghum | nucleus | 19.55 | 19.08 |
| EER99092 | Sorghum | nucleus | 16.18 | 18.56 |
| EES14266 | Sorghum | nucleus | 16.18 | 17.6 |
| OQU77017 | Sorghum | nucleus | 17.08 | 17.27 |
| EES04495 | Sorghum | nucleus | 16.63 | 15.42 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:8076140 | UniProt:A0A1Z5RL61 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | EnsemblPlants:OQU84482 | ProteinID:OQU84482 | ProteinID:OQU84482.1 |
| PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | InterPro:SBP_dom | InterPro:SBP_sf |
| EnsemblPlantsGene:SORBI_3004G062100 | SUPFAM:SSF103612 | TMHMM:TMhelix | UniParc:UPI0001A85650 | RefSeq:XP_002451645.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:+:5015589..5019321
Molecular Weight (calculated)
46457.0 Da
IEP (calculated)
7.941
GRAVY (calculated)
-0.343
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPTSTTDVD FSFGPMQSYV GFDAGGMAMP GVIERPLLQN HHHNNNHNLG VYDSFDFAAA AGLPFQESGL LPPTSSMPLM APPTTSMAAM AAMPPSLLLT
101: LPGVPTAADV VYPFGGGGAG GGFLKREDGC GGGPLVDAGG SGGRIGLNLG RRTYFSPADV LAVDRLLTRS RLGGGVGVGM GMGLGMGVLG LGLGAAHHHH
201: QPPKCQAEGC KADLSAAKHY HRRHKVCEYH AKAGSVAAAG KQQRFCQQCS RFHVLAEFDE AKRSCRKRLT EHNRRRRKPI SAQGKDSSPP PPPPKKADTC
301: ITTSYSNDLK TGASNTAAAK STAISPNGSG VSCLDVMDNG QTSSAAAAVV APTALSLAAT PPPLHEKDGS LDSMLLMQRL QGRRDNDDDE EHRHFITSLV
401: MQTQQQQQQH SGGGAGAGNI LSCSSVSDQQ QNGGGCNGFF EVDFI
101: LPGVPTAADV VYPFGGGGAG GGFLKREDGC GGGPLVDAGG SGGRIGLNLG RRTYFSPADV LAVDRLLTRS RLGGGVGVGM GMGLGMGVLG LGLGAAHHHH
201: QPPKCQAEGC KADLSAAKHY HRRHKVCEYH AKAGSVAAAG KQQRFCQQCS RFHVLAEFDE AKRSCRKRLT EHNRRRRKPI SAQGKDSSPP PPPPKKADTC
301: ITTSYSNDLK TGASNTAAAK STAISPNGSG VSCLDVMDNG QTSSAAAAVV APTALSLAAT PPPLHEKDGS LDSMLLMQRL QGRRDNDDDE EHRHFITSLV
401: MQTQQQQQQH SGGGAGAGNI LSCSSVSDQQ QNGGGCNGFF EVDFI
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.