Factsheet for PGSC0003DMT400074976

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g018780.1.1	Tomato	nucleus	93.86	93.86
VIT_15s0021g02300.t01	Wine grape	nucleus	61.77	59.54
Bra032662.1-P	Field mustard	nucleus	31.06	57.59
PGSC0003DMT400066955	Potato	nucleus	54.95	53.31
PGSC0003DMT400076399	Potato	nucleus	22.53	48.53
KRH66611	Soybean	nucleus	54.95	47.92
KRH48747	Soybean	nucleus	54.61	47.34
PGSC0003DMT400058753	Potato	nucleus	21.16	45.93
CDX90071	Canola	nucleus	48.81	45.83
Bra033221.1-P	Field mustard	nucleus	51.19	45.73
KRH75288	Soybean	nucleus	44.03	44.95
CDY15132	Canola	nucleus	34.81	43.78
CDY38043	Canola	nucleus	49.49	43.28
KRH07602	Soybean	nucleus	31.4	42.59
AT1G02065.1	Thale cress	nucleus	47.44	41.74
PGSC0003DMT400085174	Potato	nucleus	16.72	36.84
PGSC0003DMT400082789	Potato	nucleus	20.48	36.36
GSMUA_Achr2P11940_001	Banana	nucleus	33.11	30.5
GSMUA_Achr4P24610_001	Banana	nucleus	33.45	29.88
TraesCS7D01G482300.1	Wheat	nucleus	28.67	26.5
TraesCS7D01G482400.1	Wheat	nucleus	31.06	23.45
TraesCS7B01G402300.1	Wheat	nucleus	30.38	22.82
TraesCS7D01G482500.1	Wheat	nucleus	32.08	22.6
TraesCS7A01G494900.1	Wheat	nucleus	30.03	22.34
TraesCS7B01G402200.1	Wheat	nucleus	31.74	22.3
TraesCS7A01G495100.1	Wheat	nucleus	31.74	22.2
TraesCS7B01G402400.1	Wheat	nucleus	30.38	22.19
TraesCS7A01G495000.1	Wheat	nucleus	30.72	22.17
Zm00001d053756_P001	Maize	nucleus	29.69	21.43
Os06t0659100-00	Rice	nucleus	31.06	21.36
Zm00001d015451_P001	Maize	nucleus	32.08	21.32
Zm00001d026491_P001	Maize	nucleus	28.67	21.21
Zm00001d002005_P001	Maize	nucleus	28.67	21.05
Zm00001d046906_P001	Maize	nucleus	30.38	20.99
Zm00001d036692_P001	Maize	nucleus	31.06	20.97
TraesCS7D01G482200.1	Wheat	nucleus	29.01	20.83
TraesCS6B01G180300.1	Wheat	nucleus	31.4	20.81
TraesCS7A01G494800.1	Wheat	nucleus	28.33	20.8
TraesCS6D01G142100.1	Wheat	nucleus	32.08	20.8
TraesCS6A01G152000.1	Wheat	nucleus	31.74	20.76
EES11579	Sorghum	nucleus	28.33	20.75
EER88765	Sorghum	nucleus	31.4	20.72
Os04t0656500-01	Rice	nucleus	29.35	20.67
TraesCS2D01G502900.2	Wheat	nucleus	28.67	20.64
TraesCS2B01G530400.1	Wheat	nucleus	28.67	20.59
PGSC0003DMT400029751	Potato	nucleus	25.94	20.43
TraesCS2A01G502300.1	Wheat	nucleus	28.67	20.39
OQU84482	Sorghum	nucleus	30.72	20.22
Os02t0177300-00	Rice	nucleus	30.72	19.23
HORVU7Hr1G110980.3	Barley	nucleus, plastid	29.35	19.15
PGSC0003DMT400056374	Potato	nucleus	20.82	19.12
HORVU6Hr1G030490.2	Barley	nucleus, plastid	31.4	18.74
PGSC0003DMT400068752	Potato	nucleus	21.5	16.36
PGSC0003DMT400059813	Potato	nucleus	24.91	16.01
PGSC0003DMT400084734	Potato	nucleus	25.26	15.91
PGSC0003DMT400063046	Potato	nucleus	24.23	13.76
PGSC0003DMT400072745	Potato	nucleus	25.26	13.26
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	1.02	4.69

Protein Annotations

EntrezGene:102591509	MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	UniProt:M1CUF7	PFAM:PF03110	EnsemblPlantsGene:PGSC0003DMG400029162	PGSC:PGSC0003DMG400029162
EnsemblPlants:PGSC0003DMT400074976	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF4	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI0002964AB8	RefSeq:XP_006361510.1	SEG:seg	:	:

Description

Squamosa promoter binding protein-homologue 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400029162]

Coordinates

chr10:-:19322998..19324504

Molecular Weight (calculated)

33345.3 Da

IEP (calculated)

8.736

GRAVY (calculated)

-1.006

Length

293 amino acids

Sequence
(BLAST)

001: MLDYNWGEQS SVMLSNDEQN QENDQNRDFF DPYGPNTQTF TENPYPHQHF PTIQQQNHQF FHTQNNPTTL YDPRGYETCY TPHPQSSILQ QNSGFMVVPK
101: SEPHQFVGSG GGIDFGSSSN SSRIGLNLGG RTYFSSSEDD FVNRLYRRSR AVETGSIMNT PRCQAEGCNA DLTHAKHYHR RHKVCEFHSK ASTVIAAGLT
201: QRFCQQCSRF HLLSEFDNGK RSCRKRLADH NRRRRKNQQA NLENSNKSQL DSTRNSPSHT LARSPADSGA HCSSVTVAIS PPRISLDVFR QRP

Best Arabidopsis Sequence Match ( AT1G02065.1 )
(BLAST)

001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG

Arabidopsis Description

SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.