Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G142100.1 | Wheat | nucleus | 97.06 | 94.91 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 95.02 | 93.75 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 82.13 | 73.93 |
| OQU84482 | Sorghum | nucleus | 54.98 | 54.61 |
| Zm00001d015451_P001 | Maize | nucleus | 53.39 | 53.51 |
| Os02t0177300-00 | Rice | nucleus | 52.71 | 49.79 |
| TraesCS7B01G402300.1 | Wheat | nucleus | 43.44 | 49.23 |
| TraesCS7B01G402400.1 | Wheat | nucleus | 43.67 | 48.13 |
| TraesCS7B01G402200.1 | Wheat | nucleus | 45.02 | 47.72 |
| Zm00001d053756_P001 | Maize | nucleus | 42.99 | 46.8 |
| Bra032662.1-P | Field mustard | nucleus | 15.16 | 42.41 |
| GSMUA_Achr10P... | Banana | nucleus | 18.55 | 35.96 |
| TraesCS2B01G250900.1 | Wheat | nucleus | 15.61 | 35.94 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 21.72 | 35.29 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 20.14 | 34.9 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 20.81 | 33.58 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.62 | 32.89 |
| CDX90071 | Canola | nucleus | 23.08 | 32.69 |
| Bra033221.1-P | Field mustard | nucleus | 23.98 | 32.32 |
| CDY15132 | Canola | nucleus | 16.74 | 31.76 |
| KRH48747 | Soybean | nucleus | 24.21 | 31.66 |
| KRH66611 | Soybean | nucleus | 23.98 | 31.55 |
| PGSC0003DMT400074976 | Potato | nucleus | 20.81 | 31.4 |
| Solyc10g018780.1.1 | Tomato | nucleus | 20.59 | 31.06 |
| KRH07602 | Soybean | nucleus | 15.16 | 31.02 |
| AT1G02065.1 | Thale cress | nucleus | 23.08 | 30.63 |
| PGSC0003DMT400066955 | Potato | nucleus | 20.81 | 30.46 |
| KRH75288 | Soybean | nucleus | 19.68 | 30.31 |
| Solyc01g090730.2.1 | Tomato | nucleus | 20.14 | 29.77 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.76 | 29.66 |
| CDY38043 | Canola | nucleus | 22.17 | 29.25 |
| TraesCS2B01G530400.1 | Wheat | nucleus | 23.3 | 25.25 |
| TraesCS2B01G432700.1 | Wheat | nucleus | 16.97 | 21.25 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 14.93 | 20.18 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 19.23 | 19.63 |
| TraesCS7B01G158500.1 | Wheat | nucleus | 17.87 | 19.32 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 17.19 | 19.19 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 16.74 | 19.17 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 17.65 | 18.84 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 18.55 | 17.34 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G180300.1 | EnsemblPlantsGene:TraesCS6B01G180300 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr6B:-:200509075..200512019
Molecular Weight (calculated)
47840.8 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.682
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVSDMTDF GYAPMQSYPN FEPAGMVMPG DRQPPFQHHH LYDSLDFNAA AFSFQDPVAL FSSGSASSNQ LQQPFLQTQV SMPTMASSSL LQAPMMTLPG
101: MLTSSSASPV DAYTFGGGGS AGFLKREEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRVGG AGAMGMLGLG LGAAAHHHQT PRCQAEGCKA
201: DLSAAKHYHR RHKVCEYHAK AATVAASGKQ QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPAGA QGKDSPPPSK KADASITSSY TGDHRTNKST
301: TGATFSPSAS GFSCLQQQQQ HEIDNGGQSS NATPTNLSLA APPPPPPPQD DARFGAGLDT MLLIQQQGPD EQQEEEQQQH FMMTSLVQSH RHQQQQQQQQ
401: GDSGNILSCS TTSPSDQRRH QNDGDSCCNG NSMQHFFEVE FM
101: MLTSSSASPV DAYTFGGGGS AGFLKREEGG PFSDVGGGGR IGLNLGRRTY FSPADVLAVD RLLMRSRVGG AGAMGMLGLG LGAAAHHHQT PRCQAEGCKA
201: DLSAAKHYHR RHKVCEYHAK AATVAASGKQ QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPAGA QGKDSPPPSK KADASITSSY TGDHRTNKST
301: TGATFSPSAS GFSCLQQQQQ HEIDNGGQSS NATPTNLSLA APPPPPPPQD DARFGAGLDT MLLIQQQGPD EQQEEEQQQH FMMTSLVQSH RHQQQQQQQQ
401: GDSGNILSCS TTSPSDQRRH QNDGDSCCNG NSMQHFFEVE FM
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.