CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046906_P001	Maize	nucleus	83.56	87.5
TraesCS7D01G482400.1	Wheat	nucleus	61.94	70.88
TraesCS7D01G482300.1	Wheat	nucleus	50.45	70.66
TraesCS7A01G495100.1	Wheat	nucleus	65.99	69.93
TraesCS7A01G495000.1	Wheat	nucleus	63.51	69.46
TraesCS7D01G482500.1	Wheat	nucleus	64.86	69.23
Os06t0659100-00	Rice	nucleus	65.77	68.54
TraesCS7B01G402300.1	Wheat	nucleus	60.14	68.46
TraesCS7B01G402200.1	Wheat	nucleus	64.19	68.35
TraesCS7A01G494900.1	Wheat	nucleus	59.23	66.75
TraesCS7B01G402400.1	Wheat	nucleus	56.76	62.84
TraesCS7D01G482200.1	Wheat	nucleus	56.31	61.27
TraesCS7A01G494800.1	Wheat	nucleus	54.05	60.15
HORVU7Hr1G110980.3	Barley	nucleus, plastid	59.01	58.35
OQU84482	Sorghum	nucleus	45.72	45.62
Bra032662.1-P	Field mustard	nucleus	15.99	44.94
GSMUA_Achr3P00810_001	Banana	nucleus	22.52	39.22
GSMUA_Achr10P...	Banana	nucleus	19.37	37.72
GSMUA_Achr4P20590_001	Banana	nucleus	22.75	37.13
GSMUA_Achr7P05010_001	Banana	nucleus	21.85	35.4
EER97257	Sorghum	nucleus	16.22	33.49
VIT_15s0021g02300.t01	Wine grape	nucleus	21.85	31.91
PGSC0003DMT400074976	Potato	nucleus	20.72	31.4
Solyc10g018780.1.1	Tomato	nucleus	20.5	31.06
PGSC0003DMT400066955	Potato	nucleus	20.95	30.79
CDX90071	Canola	nucleus	21.62	30.77
Solyc01g090730.2.1	Tomato	nucleus	20.72	30.77
Bra033221.1-P	Field mustard	nucleus	22.52	30.49
KRH75288	Soybean	nucleus	19.59	30.31
GSMUA_Achr7P08750_001	Banana	nucleus	23.87	29.94
KRH66611	Soybean	nucleus	22.52	29.76
KRH48747	Soybean	nucleus	22.3	29.29
CDY38043	Canola	nucleus	22.07	29.25
AT1G02065.1	Thale cress	nucleus	21.4	28.53
CDY15132	Canola	nucleus	14.86	28.33
KXG36284	Sorghum	nucleus	13.29	27.06
EES11579	Sorghum	nucleus	23.87	26.5
KRH07602	Soybean	nucleus	12.61	25.93
EES04609	Sorghum	nucleus	15.99	21.07
EES11232	Sorghum	nucleus	19.59	20.81
EER99092	Sorghum	nucleus	17.12	19.59
EER97011	Sorghum	nucleus	20.27	19.4
EES01979	Sorghum	nucleus	17.57	19.35
KXG25534	Sorghum	nucleus	19.37	18.86
EES14266	Sorghum	nucleus	16.89	18.34
EES04495	Sorghum	nucleus	18.69	17.29
OQU77017	Sorghum	nucleus	16.22	16.36

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:8058456	UniProt:C5Z790	EnsemblPlants:EER88765	ProteinID:EER88765
ProteinID:EER88765.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF34	InterPro:SBP_dom	InterPro:SBP_sf
EnsemblPlantsGene:SORBI_3010G215700	SUPFAM:SSF103612	UniParc:UPI0001A88EC9	RefSeq:XP_002437398.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:55903425..55906907

Molecular Weight (calculated)

47132.5 Da

IEP (calculated)

9.156

GRAVY (calculated)

-0.670

Length

444 amino acids

Sequence
(BLAST)

001: MMSGRLNVAT SASPGDDFPF ASMQQQQQPP PPPPPPPYVG FEHGVAGGGG GQRGAGGMGM QQQQHLYDGL DFAAALQFQQ EAPHHHHHQL LTLPSSLGPM
101: APPPLPMPMP MPLQMPMPMP GMPGGDHVYQ ALGMVKREGG GGGGADAGRI GLNLGRRTYF SPGDMLAVDR LLMRSRLGGV FGLGFGGAHH QPPRCQAEGC
201: KADLSGAKHY HRRHKVCEYH AKASVVAAGG KQQRFCQQCS RFHVLSEFDE VKRSCRKRLA EHNRRRRKPA TTASSKDAAS PPANKKPNGG SITSSYSTDN
301: KNLSTAKSTM SSNTSSVISC LDQAGNKQQQ LARPTLTLGA SQDNKDQHQH QQQLSTMLQV QAAGGGHHQE QHFLTSLQVH NNGGCGGGNN NNILSCSSVC
401: SSGALPSSAN GEVSDQNTTT TTTNNGNGGS SNNNLHNLFE VDFM

Best Arabidopsis Sequence Match ( AT1G02065.1 )
(BLAST)

001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG

Arabidopsis Description

SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.