Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96251 | Canola | nucleus | 95.8 | 97.26 |
| CDY50300 | Canola | nucleus | 95.5 | 96.95 |
| CDX95958 | Canola | nucleus | 62.46 | 69.57 |
| CDY69014 | Canola | nucleus | 63.96 | 66.77 |
| AT1G69170.1 | Thale cress | nucleus | 75.08 | 61.73 |
| CDY37684 | Canola | nucleus | 16.82 | 39.72 |
| CDY57212 | Canola | nucleus | 16.82 | 39.72 |
| CDY17204 | Canola | nucleus | 15.92 | 37.32 |
| CDY27935 | Canola | nucleus | 16.22 | 36.73 |
| CDY24113 | Canola | nucleus | 16.52 | 34.16 |
| CDY50515 | Canola | nucleus | 15.92 | 33.76 |
| CDX97645 | Canola | nucleus | 16.82 | 31.28 |
| CDX98540 | Canola | nucleus | 16.52 | 30.73 |
| CDY25876 | Canola | nucleus | 16.22 | 30.68 |
| CDY61210 | Canola | nucleus | 16.22 | 30.17 |
| CDY20128 | Canola | nucleus | 15.92 | 30.11 |
| CDX79544 | Canola | nucleus | 16.52 | 29.41 |
| CDY32310 | Canola | nucleus | 15.32 | 28.98 |
| KRH75117 | Soybean | nucleus | 40.54 | 27.95 |
| KRH70968 | Soybean | nucleus | 40.24 | 27.8 |
| Solyc03g114850.2.1 | Tomato | nucleus | 20.72 | 26.04 |
| CDY61750 | Canola | nucleus | 22.82 | 24.68 |
| CDY47656 | Canola | nucleus | 23.72 | 24.38 |
| CDY34028 | Canola | nucleus | 24.92 | 23.85 |
| CDY45826 | Canola | nucleus | 24.32 | 23.75 |
| CDX84872 | Canola | nucleus | 24.32 | 23.75 |
| CDX98259 | Canola | nucleus | 23.12 | 23.69 |
| CDX71667 | Canola | nucleus | 25.23 | 23.4 |
| CDX67715 | Canola | nucleus | 21.92 | 23.1 |
| CDX79888 | Canola | nucleus | 25.53 | 23.1 |
| CDY53504 | Canola | nucleus | 25.53 | 22.97 |
| CDY06881 | Canola | nucleus | 24.92 | 22.86 |
| CDY14818 | Canola | nucleus | 24.92 | 22.62 |
| KRH54739 | Soybean | nucleus | 25.23 | 22.11 |
| CDX90071 | Canola | nucleus | 20.42 | 21.79 |
| CDY67700 | Canola | nucleus | 22.22 | 21.39 |
| Solyc05g012040.2.1 | Tomato | nucleus | 35.44 | 21.15 |
| CDY27612 | Canola | nucleus | 20.72 | 20.97 |
| Solyc12g038520.1.1 | Tomato | nucleus | 27.93 | 20.81 |
| PGSC0003DMT400072745 | Potato | nucleus | 34.53 | 20.61 |
| CDX84928 | Canola | nucleus | 22.52 | 20.6 |
| CDY27611 | Canola | nucleus | 22.52 | 20.55 |
| CDY15712 | Canola | nucleus | 22.82 | 20.32 |
| CDY03913 | Canola | nucleus | 22.52 | 20.22 |
| PGSC0003DMT400059813 | Potato | nucleus | 27.63 | 20.18 |
| CDX84927 | Canola | nucleus | 22.22 | 20.16 |
| CDY03914 | Canola | nucleus | 22.52 | 20.16 |
| CDY38043 | Canola | nucleus | 20.12 | 20.0 |
| CDY15713 | Canola | nucleus | 23.12 | 19.74 |
| CDY11816 | Canola | nucleus | 21.62 | 19.73 |
| VIT_01s0011g00130.t01 | Wine grape | nucleus | 30.03 | 19.72 |
| KRH03167 | Soybean | nucleus | 31.83 | 19.49 |
| KRH56776 | Soybean | nucleus | 31.53 | 19.13 |
| CDY32959 | Canola | nucleus | 22.22 | 18.97 |
| CDY43604 | Canola | nucleus | 21.62 | 18.7 |
| CDY15132 | Canola | nucleus | 12.91 | 18.45 |
| KRH63174 | Soybean | nucleus | 31.23 | 18.44 |
| VIT_17s0000g05020.t01 | Wine grape | nucleus | 30.33 | 18.13 |
| PGSC0003DMT400063046 | Potato | nucleus | 27.93 | 18.02 |
| CDY22356 | Canola | nucleus | 22.82 | 14.64 |
| CDY47812 | Canola | nucleus | 22.52 | 14.53 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.6 | 3.45 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078CWR9 | EnsemblPlants:CDX81606 | ProteinID:CDX81606 | ProteinID:CDX81606.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00135341001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF22 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EF00FE | SEG:seg | : | : | : | : |
Description
BnaC02g19100D
Coordinates
chrLK031825:+:1959132..1960720
Molecular Weight (calculated)
37878.1 Da
IEP (calculated)
8.811
GRAVY (calculated)
-0.799
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSWSYGRSV FLPNGTIAEN QSSMPGFEME TSDGFITKVA SSSYVEENQS SNLSRIDFKF RSYENHDGTS SLRAKKTRAS NSCSQSPLCQ VYGCNMDLSF
101: SKDYHKRHRV CDAHSKSSVV IVSGVEQRFC QQCSRFHFLS EFDDGKRSCR RRLAGHNERR RKPSFYFLPG KRHKLLPQES FPGSFLYRVM DEHDHRASRL
201: VSFKDEPKPA MEASGVSYIW DLQEAVPRST CALSLLSAQS QQHLSANNPN KSFSITQPCQ NLNHSTGDYH QMQPLRIDPG KKTKSVTSSS SCNGNGSSTV
301: DLLQLSSHLQ RIQQQQRTFT DDVKQEYNEL YFP
101: SKDYHKRHRV CDAHSKSSVV IVSGVEQRFC QQCSRFHFLS EFDDGKRSCR RRLAGHNERR RKPSFYFLPG KRHKLLPQES FPGSFLYRVM DEHDHRASRL
201: VSFKDEPKPA MEASGVSYIW DLQEAVPRST CALSLLSAQS QQHLSANNPN KSFSITQPCQ NLNHSTGDYH QMQPLRIDPG KKTKSVTSSS SCNGNGSSTV
301: DLLQLSSHLQ RIQQQQRTFT DDVKQEYNEL YFP
001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
Arabidopsis Description
SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.