Factsheet for Solyc03g114850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063046	Potato	nucleus	88.3	45.35
Solyc02g077920.2.1	Tomato	nucleus	20.75	40.44
Solyc10g009080.2.1	Tomato	nucleus	19.25	37.78
Solyc07g053810.2.1	Tomato	nucleus	20.38	36.73
Solyc07g062980.2.1	Tomato	nucleus	17.36	34.85
Solyc10g018780.1.1	Tomato	nucleus	27.17	24.57
Solyc01g090730.2.1	Tomato	nucleus	26.04	23.08
Bra004363.1-P	Field mustard	nucleus	26.04	22.92
CDX95958	Canola	nucleus	25.66	22.74
CDY69014	Canola	nucleus	26.42	21.94
Bra038324.1-P	Field mustard	nucleus	26.42	21.47
CDY50300	Canola	nucleus	26.42	21.34
CDX96251	Canola	nucleus	26.04	21.04
CDX81606	Canola	nucleus	26.04	20.72
KRH54739	Soybean	nucleus	27.92	19.47
Solyc12g038520.1.1	Tomato	nucleus	32.83	19.46
Solyc05g015840.2.1	Tomato	nucleus	22.64	19.23
AT1G69170.1	Thale cress	nucleus	27.55	18.02
KRH56776	Soybean	nucleus	34.72	16.76
VIT_17s0000g05020.t01	Wine grape	nucleus	35.09	16.7
Solyc10g078700.1.1	Tomato	nucleus	23.4	16.67
KRH03167	Soybean	nucleus	33.96	16.54
KRH63174	Soybean	nucleus	33.21	15.6
Solyc05g012040.2.1	Tomato	nucleus	32.83	15.59
Solyc04g045560.2.1	Tomato	nucleus	19.25	14.57
Solyc05g015510.2.1	Tomato	nucleus	23.02	13.17

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	UniProt:K4BKY7	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF22
InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	EnsemblPlantsGene:Solyc03g114850.2	EnsemblPlants:Solyc03g114850.2.1	UniParc:UPI00027685A3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:64743705..64749187

Molecular Weight (calculated)

29470.0 Da

IEP (calculated)

9.835

GRAVY (calculated)

-0.646

Length

265 amino acids

Sequence
(BLAST)

001: MESWSYFSGG KGFVSEESVS VNDGMRRVKN GVMGWELKTQ SSYGMCTTDN QGFHELGSPN LMRKPMFTDQ MRDGFASSKH WGGGGGSIVG AFSGEDKSSS
101: KLSSSAVDSI SRDSSLIDLK LGRFPDHHVD GNIFKSAKTL SSSTSAESIL PAKRMRAGGL NSHKPFCQVQ GCGKDLSPCK DYHKRHKVCE VHSKTAKVIV
201: NGIEQRFCQQ CSRFHLLAEF DDGKRSCRKR LAGHNERRRK PPHTGMYQIS WNFFCNVTLC MPRHT

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.