Factsheet for VIT_12s0028g03350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053810.2.1	Tomato	nucleus	46.75	53.74
VIT_10s0003g00050.t01	Wine grape	nucleus	42.6	51.43
KRH22367	Soybean	nucleus	47.34	50.63
PGSC0003DMT400082789	Potato	nucleus	46.75	47.88
VIT_19s0014g02350.t01	Wine grape	nucleus	54.44	45.1
EER97257	Sorghum	nucleus	46.75	36.74
Os07t0505200-01	Rice	nucleus	42.01	32.87
Zm00001d006451_P001	Maize	mitochondrion	47.34	31.5
VIT_04s0210g00170.t01	Wine grape	nucleus	35.5	28.99
Zm00001d021573_P001	Maize	mitochondrion	34.32	28.16
KXG36284	Sorghum	nucleus	33.73	26.15
VIT_15s0021g02300.t01	Wine grape	nucleus	36.09	20.07
VIT_08s0007g06270.t01	Wine grape	nucleus	37.28	16.62
VIT_15s0021g02290.t01	Wine grape	nucleus	39.05	16.54
VIT_01s0010g03910.t01	Wine grape	nucleus	34.32	14.91
VIT_14s0068g01780.t01	Wine grape	nucleus	33.14	14.81
VIT_17s0000g01260.t01	Wine grape	nucleus	33.73	14.21
VIT_01s0010g03710.t01	Wine grape	nucleus	34.91	12.37
VIT_11s0065g00170.t01	Wine grape	nucleus	32.54	11.83
VIT_01s0011g00130.t01	Wine grape	nucleus	32.54	10.85
VIT_17s0000g05020.t01	Wine grape	nucleus	35.5	10.77

Protein Annotations

EntrezGene:100245363	wikigene:100245363	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CBI21879	ProteinID:CBI21879.3
UniProt:E0CTG4	EMBL:FN595235	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100245363	wikigene:LOC100245363	PFAM:PF03110	PIRSF:PIRSF037575	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF64	InterPro:SBP_dom	InterPro:SBP_fam	InterPro:SBP_sf	SUPFAM:SSF103612
TIGR:TC59257	TIGR:TC69623	UniParc:UPI00015CA169	ArrayExpress:VIT_12s0028g03350	EnsemblPlantsGene:VIT_12s0028g03350	EnsemblPlants:VIT_12s0028g03350.t01
unigene:Vvi.14839	RefSeq:XP_002275728	RefSeq:XP_002275728.1	SEG:seg	:	:

Description

Squamosa promoter-binding-like protein [Source:UniProtKB/TrEMBL;Acc:E0CTG4]

Coordinates

chr12:-:4108335..4110142

Molecular Weight (calculated)

19188.7 Da

IEP (calculated)

9.208

GRAVY (calculated)

-1.076

Length

169 amino acids

Sequence
(BLAST)

001: MEAKKMVKKE MEGTEEVDED DQLGCSEDDK KKKAAAGGSG KKAAAAMRCC QAERCTADLT DAKQYHRRHK VCEHHAKAQV VVVGGIRQRF CQQCSRFHEL
101: SEFDEAKRSC RRRLAGHNER RRKNSADHAE GSSRKGTQLK EIVCGQVDDR GRIQITIQEN AAYKHFQIR

Best Arabidopsis Sequence Match ( AT1G53160.2 )
(BLAST)

001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR

Arabidopsis Description

SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.