Factsheet for GSMUA_Achr4P05990_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P05360_001
GSMUA_Achr3P27750_001
GSMUA_Achr4P05720_001
GSMUA_Achr4P12470_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001
GSMUA_Achr5P21990_001
GSMUA_Achr5P22630_001
GSMUA_Achr6P36010_001
GSMUA_Achr8P23820_001
GSMUA_Achr9P13950_001
GSMUA_Achr9P14160_001
GSMUA_Achr9P23140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P05360_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P27750_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P05720_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P12470_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P21990_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P22630_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr6P36010_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr8P23820_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P14160_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P23140_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P25000_001	AT5G35620.1	21798944
AT2G24050.1	GSMUA_Achr5P12940_001	AT5G35620.1	21798944
AT5G57870.1	GSMUA_Achr9P13950_001	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28040_001	Banana	cytosol	59.86	19.51
AT1G62410.1	Thale cress	cytosol	28.57	18.83
CDY28203	Canola	cytosol	59.18	17.03
CDY28211	Canola	mitochondrion	54.42	16.95
Bra011218.1-P	Field mustard	plastid	56.46	15.17
Solyc07g005780.1.1	Tomato	cytosol	43.54	14.22
GSMUA_Achr9P22750_001	Banana	plastid	68.03	13.44
GSMUA_AchrUn_...	Banana	cytosol	67.35	13.27
GSMUA_Achr11P...	Banana	cytosol	28.57	12.69
VIT_11s0037g00490.t01	Wine grape	plastid	65.99	12.22
KRH03030	Soybean	endoplasmic reticulum	64.63	12.04
KRH72326	Soybean	endoplasmic reticulum	63.95	11.99
CDY39236	Canola	cytosol	59.86	11.91
Solyc07g005810.2.1	Tomato	plastid	62.59	11.9
CDX72262	Canola	cytosol	59.86	11.8
Bra024051.1-P	Field mustard	cytosol	59.86	11.76
CDX68687	Canola	plastid	59.86	11.76
PGSC0003DMT400029102	Potato	cytosol, plastid	61.9	11.67
Bra011211.1-P	Field mustard	plastid	58.5	11.48
Os02t0611500-01	Rice	cytosol	60.54	11.41
Solyc12g009960.1.1	Tomato	nucleus	59.86	11.38
EES12452	Sorghum	cytosol	61.22	11.38
KRH63081	Soybean	endoplasmic reticulum	59.86	11.37
KRH55033	Soybean	endoplasmic reticulum	59.86	11.35
Zm00001d025777_P007	Maize	plastid	60.54	11.34
PGSC0003DMT400020464	Potato	cytosol	59.18	11.25
AT2G24050.1	Thale cress	plastid	57.14	11.24
Zm00001d003147_P001	Maize	plastid	59.86	11.2
Os04t0499300-01	Rice	plastid	61.22	11.17
HORVU2Hr1G086240.1	Barley	cytosol	57.14	11.16
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	65.31	10.87
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	56.46	10.53
TraesCS2B01G373600.1	Wheat	cytosol	56.46	10.52
Bra020407.1-P	Field mustard	plastid	55.1	10.52
CDY32742	Canola	plastid	55.1	10.52
TraesCS2A01G354900.1	Wheat	cytosol	56.46	10.51
CDY02774	Canola	plastid	55.1	10.49
AT5G57870.1	Thale cress	plastid	54.42	10.26
CDY69274	Canola	cytosol, mitochondrion	21.77	9.79
GSMUA_Achr4P12750_001	Banana	cytosol	69.39	8.79
GSMUA_Achr2P18290_001	Banana	cytosol	32.65	7.29
AT4G30680.1	Thale cress	mitochondrion, plastid	12.24	6.84
HORVU6Hr1G023180.1	Barley	cytosol	10.88	5.42
Os06t0520600-01	Rice	extracellular	22.45	4.64
GSMUA_Achr4P05970_001	Banana	cytosol	4.76	4.64
GSMUA_Achr11P...	Banana	nucleus	33.33	3.05
GSMUA_Achr11P...	Banana	nucleus	33.33	2.96
GSMUA_Achr8P14940_001	Banana	plastid	32.65	2.47
GSMUA_Achr2P18280_001	Banana	nucleus	10.88	1.56
GSMUA_Achr4P06000_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P05990_001	EnsemblPlants:GSMUA_Achr4T05990_001	EnsemblPlantsGene:GSMUA_Achr4G05990_001	Gene3D:1.25.40.180	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	InterPro:ARM-type_fold	InterPro:IPR016021	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	PFAM:PF02854	SUPFAM:SSF48371	UniParc:UPI000296C94B
UniProt:M0SLG6	MapMan:35.1	:	:	:	:

Description

Eukaryotic initiation factor iso-4F subunit p82-34 [Source:GMGC_GENE;Acc:GSMUA_Achr4G05990_001]

Coordinates

chr4:-:4604177..4604869

Molecular Weight (calculated)

17029.8 Da

IEP (calculated)

7.855

GRAVY (calculated)

-0.454

Length

147 amino acids

Sequence
(BLAST)

001: MDCKDKERVV KLHTLGNIRL ISKLLKQKMV PEKIVHHIAQ ELLGHDNRTC PAEENDEAIC QLFNTIGKHL DESPNSHCFN DAYFNWLKES TINPQLAPHL
101: RFMVCVVLGL RKNNWIPHCE EVKVKTISKI HIEVEKNLGL HPCNHEK

Best Arabidopsis Sequence Match ( AT2G24050.1 )
(BLAST)

001: MQQQGEPSVL SLRPGGGGGK SRLFVPRFSS SSSFDLTNGG SEETPFPVKR ENSGERVRFS REEILQHRES VQVSDEILRR CKEIAVELFG EEQSWGNHAA
101: ESKITNHTQH RHTETDNRDW HSRSQIPTSG KEWLRDDPRE AKSTWQGSGP TPVLIKAEVP WSAKRGALSD KDRVVKSVKG ILNKLTPEKY ELLKGQLIDA
201: GITSADILKE VIQLIFENAI LQPTFCEMYA LLCFDINGQL PSFPSEEPGG KEITFKRVLL NNCQEAFEGA GKLKEEIRQM TNPDQEMERM DKEKMAKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVQELLG DDTKACPAEG DVEALCQFFI TIGKQLDDSP RSRGINDTYF GRLKELARHP QLELRLRFMV QNVVDLRANK
401: WVPRREEVKA KKINEIHSEA ERNLGMRPGA MASMRNNNNN RAAVSGAADG MGLGNILGRP GTGGMMPGMP GTRVMPMDED GWEMARTRSM PRGNRQTVQQ
501: PRFQPPPAIN KSLSVNSRLL PQGSGGLLNG GGRPSPLLQG NGSSSAPQAS KPIPTVEKPQ PRSQPQPQPQ AAPLANSLNA GELERKTKSL LEEYFSIRLV
601: DEALQCVEEL KSPSYHPELV KETISLGLEK NPPLVEPIAK LLKHLISKNV LTSKDLGAGC LLYGSMLDDI GIDLPKAPNS FGEFLGELVS AKVLDFELVR
701: DVLKKMEDEW FRKTVLNAVI KSVRECPSGQ SVLDSQAVEV EACQSLL

Arabidopsis Description

EIF(ISO)4G2Eukaryotic translation initiation factor isoform 4G-2 [Source:UniProtKB/Swiss-Prot;Acc:O82233]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.