Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc07g005810.2.1 | Tomato | plastid | 71.16 | 73.09 |
KRH55033 | Soybean | endoplasmic reticulum | 70.65 | 72.39 |
PGSC0003DMT400020464 | Potato | cytosol | 70.4 | 72.32 |
KRH63081 | Soybean | endoplasmic reticulum | 70.15 | 71.96 |
PGSC0003DMT400029102 | Potato | cytosol, plastid | 70.65 | 71.92 |
Solyc12g009960.1.1 | Tomato | nucleus | 69.9 | 71.8 |
GSMUA_Achr4P06000_001 | Banana | cytosol | 3.65 | 70.73 |
KRH03030 | Soybean | endoplasmic reticulum | 69.27 | 69.71 |
KRH72326 | Soybean | endoplasmic reticulum | 68.39 | 69.26 |
VIT_04s0008g06770.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 76.32 | 68.63 |
GSMUA_Achr4P05990_001 | Banana | cytosol | 12.22 | 65.99 |
AT5G57870.1 | Thale cress | plastid | 64.74 | 65.9 |
CDY28203 | Canola | cytosol | 41.94 | 65.17 |
CDY32742 | Canola | plastid | 62.85 | 64.81 |
Bra020407.1-P | Field mustard | plastid | 62.72 | 64.68 |
GSMUA_Achr9P22750_001 | Banana | plastid | 60.33 | 64.38 |
CDY69274 | Canola | cytosol, mitochondrion | 26.45 | 64.22 |
CDY02774 | Canola | plastid | 62.34 | 64.12 |
Bra011218.1-P | Field mustard | plastid | 43.95 | 63.8 |
GSMUA_AchrUn_... | Banana | cytosol | 59.7 | 63.54 |
CDY39236 | Canola | cytosol | 58.56 | 62.92 |
EES12452 | Sorghum | cytosol | 62.47 | 62.71 |
Bra024051.1-P | Field mustard | cytosol | 58.94 | 62.57 |
Zm00001d003147_P001 | Maize | plastid | 61.71 | 62.34 |
CDX72262 | Canola | cytosol | 58.31 | 62.06 |
Zm00001d025777_P007 | Maize | plastid | 61.34 | 62.04 |
CDY28211 | Canola | mitochondrion | 36.52 | 61.44 |
CDX68687 | Canola | plastid | 57.56 | 61.1 |
HORVU2Hr1G086240.1 | Barley | cytosol | 57.93 | 61.09 |
Os02t0611500-01 | Rice | cytosol | 59.82 | 60.9 |
Bra011211.1-P | Field mustard | plastid | 57.43 | 60.88 |
TraesCS2A01G354900.1 | Wheat | cytosol | 60.08 | 60.38 |
TraesCS2B01G373600.1 | Wheat | cytosol | 59.82 | 60.2 |
TraesCS2D01G353600.1 | Wheat | cytosol, golgi, nucleus | 59.7 | 60.15 |
Os04t0499300-01 | Rice | plastid | 60.33 | 59.43 |
AT2G24050.1 | Thale cress | plastid | 55.29 | 58.77 |
AT4G30680.1 | Thale cress | mitochondrion, plastid | 17.76 | 53.61 |
GSMUA_Achr3P28040_001 | Banana | cytosol | 27.96 | 49.22 |
Solyc07g005780.1.1 | Tomato | cytosol | 27.71 | 48.89 |
AT1G62410.1 | Thale cress | cytosol | 12.85 | 45.74 |
GSMUA_Achr4P05970_001 | Banana | cytosol | 8.44 | 44.37 |
GSMUA_Achr4P12750_001 | Banana | cytosol | 64.48 | 44.14 |
HORVU6Hr1G023180.1 | Barley | cytosol | 15.24 | 41.02 |
Os06t0520600-01 | Rice | extracellular | 19.65 | 21.94 |
VIT_15s0021g00980.t01 | Wine grape | nucleus | 23.05 | 10.69 |
Protein Annotations
Gene3D:1.25.40.180 | EntrezGene:100260481 | wikigene:100260481 | MapMan:17.4.2.4.2 | EMBL:AM471193 | InterPro:ARM-type_fold |
ProteinID:CAN70546 | ProteinID:CAN70546.1 | ProteinID:CCB59769 | ProteinID:CCB59769.1 | UniProt:F6HYK5 | EMBL:FN596499 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR003891 |
InterPro:IPR016021 | InterPro:Initiation_fac_eIF4g_MI | EntrezGene:LOC100260481 | wikigene:LOC100260481 | InterPro:MIF4-like_sf | InterPro:MIF4G-like_typ-3 |
PFAM:PF02847 | PFAM:PF02854 | PFscan:PS51366 | PANTHER:PTHR23253 | PANTHER:PTHR23253:SF32 | SMART:SM00543 |
SMART:SM00544 | SUPFAM:SSF48371 | TIGR:TC57539 | TIGR:TC66217 | UniParc:UPI00015C9A24 | ArrayExpress:VIT_11s0037g00490 |
EnsemblPlantsGene:VIT_11s0037g00490 | EnsemblPlants:VIT_11s0037g00490.t01 | unigene:Vvi.1339 | RefSeq:XP_002277218 | RefSeq:XP_002277218.2 | RefSeq:XP_003633181 |
RefSeq:XP_003633181.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:8303115..8313095
Molecular Weight (calculated)
87000.6 Da
IEP (calculated)
8.309
GRAVY (calculated)
-0.403
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MQADQTVLSL RPGGGGGGGG GANRGSRFLG PRFDSSSSSP FGSSSDLPVL RPHGGAPSSF SIKAGDSRFE GRERVRFTRD KLLQLREVVD VPEDILKIKQ
101: EIEAELFGED QNWGRGESNL PNQSQSRYSE PDNRDWRGRS AQLPASGEER SWFDSRQQEA NQFNRQDQLN SQFAKAQISS VLGGPAPALV KAEVPWSARR
201: VNLSEKERVL KTVKGILNKL TPEKFDLLKG QLIDSGITTA DILKGVISLI FDKAVLEPTF CPMYALLCSD LNEKLPPFPS DEPGGKEITF KRVLLNNCQE
301: AFEGSDKLRA EIRQMTAPEQ ELERRDKERM VKLRTLGNIR LIGELLKQKM VPEKIVHHIV QELLGHDNKS CPDEENVEAI CQFFNTIGKQ LDESTKSRRI
401: NDMYFSRLKE LTTNPQLAPR LRFMVRDVLD LRANSWVPRR EEVKAKTITE IHTEAEKNLG LRPGATASIR NSRNIVSGAQ GTMGPGGFPI TRPGSGGMMP
501: GMPGTRKMPG MPGIDNDNWE VPRTRAMPRG DGSGVQTRVQ QTHVQSPLMG KSMPLNSRLL PQGSAGFISG RTSALLQGSG PPPARTANFG LGMEPALQSP
601: VPAKSVPVAS IVPAAEKPVT PAARLNSDDL RRKTVSLLEE YFGVRILDEA LQCVEELKSP AYHPEVVKEA ISLALEKSPP CVDPVAKLLE FLFSKKVLTT
701: MDIGTGCLMY GSMLDDIGID LPKAPNSFGE VIGNLVLAGA LDFKVVTEIM KKVEDDRFQK MIFDAVMRIV SSSPSGQGVL DSQAADIAAC QSLL
101: EIEAELFGED QNWGRGESNL PNQSQSRYSE PDNRDWRGRS AQLPASGEER SWFDSRQQEA NQFNRQDQLN SQFAKAQISS VLGGPAPALV KAEVPWSARR
201: VNLSEKERVL KTVKGILNKL TPEKFDLLKG QLIDSGITTA DILKGVISLI FDKAVLEPTF CPMYALLCSD LNEKLPPFPS DEPGGKEITF KRVLLNNCQE
301: AFEGSDKLRA EIRQMTAPEQ ELERRDKERM VKLRTLGNIR LIGELLKQKM VPEKIVHHIV QELLGHDNKS CPDEENVEAI CQFFNTIGKQ LDESTKSRRI
401: NDMYFSRLKE LTTNPQLAPR LRFMVRDVLD LRANSWVPRR EEVKAKTITE IHTEAEKNLG LRPGATASIR NSRNIVSGAQ GTMGPGGFPI TRPGSGGMMP
501: GMPGTRKMPG MPGIDNDNWE VPRTRAMPRG DGSGVQTRVQ QTHVQSPLMG KSMPLNSRLL PQGSAGFISG RTSALLQGSG PPPARTANFG LGMEPALQSP
601: VPAKSVPVAS IVPAAEKPVT PAARLNSDDL RRKTVSLLEE YFGVRILDEA LQCVEELKSP AYHPEVVKEA ISLALEKSPP CVDPVAKLLE FLFSKKVLTT
701: MDIGTGCLMY GSMLDDIGID LPKAPNSFGE VIGNLVLAGA LDFKVVTEIM KKVEDDRFQK MIFDAVMRIV SSSPSGQGVL DSQAADIAAC QSLL
001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL
Arabidopsis Description
EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.