Factsheet for GSMUA_AchrUn_randomP13090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P05360_001
GSMUA_Achr3P27750_001
GSMUA_Achr4P05720_001
GSMUA_Achr4P12470_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001
GSMUA_Achr5P21990_001
GSMUA_Achr5P22630_001
GSMUA_Achr6P36010_001
GSMUA_Achr8P23820_001
GSMUA_Achr9P13950_001
GSMUA_Achr9P14160_001
GSMUA_Achr9P23140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P05360_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P27750_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P05720_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P12470_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P21990_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P22630_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr6P36010_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr8P23820_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P14160_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P23140_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P25000_001	AT5G35620.1	21798944
AT2G24050.1	GSMUA_Achr5P12940_001	AT5G35620.1	21798944
AT5G57870.1	GSMUA_Achr9P13950_001	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06000_001	Banana	cytosol	4.16	75.61
GSMUA_Achr4P05990_001	Banana	cytosol	13.27	67.35
GSMUA_Achr9P22750_001	Banana	plastid	66.76	66.94
VIT_11s0037g00490.t01	Wine grape	plastid	63.54	59.7
Zm00001d025777_P007	Maize	plastid	61.13	58.09
KRH03030	Soybean	endoplasmic reticulum	61.26	57.92
CDY69274	Canola	cytosol, mitochondrion	25.34	57.8
KRH72326	Soybean	endoplasmic reticulum	60.59	57.65
KRH55033	Soybean	endoplasmic reticulum	59.65	57.42
EES12452	Sorghum	cytosol	60.46	57.02
Solyc07g005810.2.1	Tomato	plastid	58.71	56.66
Zm00001d003147_P001	Maize	plastid	59.65	56.62
KRH63081	Soybean	endoplasmic reticulum	58.71	56.59
PGSC0003DMT400020464	Potato	cytosol	58.45	56.4
Bra011218.1-P	Field mustard	plastid	41.29	56.31
PGSC0003DMT400029102	Potato	cytosol, plastid	58.71	56.15
Solyc12g009960.1.1	Tomato	nucleus	57.77	55.76
CDY28211	Canola	mitochondrion	35.25	55.72
Os02t0611500-01	Rice	cytosol	57.91	55.38
HORVU2Hr1G086240.1	Barley	cytosol	54.83	54.32
Os04t0499300-01	Rice	plastid	58.58	54.22
TraesCS2A01G354900.1	Wheat	cytosol	57.37	54.18
TraesCS2B01G373600.1	Wheat	cytosol	57.24	54.12
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	57.1	54.06
CDY39236	Canola	cytosol	53.22	53.72
Bra024051.1-P	Field mustard	cytosol	53.35	53.21
CDX72262	Canola	cytosol	53.08	53.08
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.93	52.32
CDX68687	Canola	plastid	52.41	52.27
CDY28203	Canola	cytosol	35.66	52.05
AT5G57870.1	Thale cress	plastid	54.29	51.92
Bra011211.1-P	Field mustard	plastid	51.61	51.4
Bra020407.1-P	Field mustard	plastid	52.81	51.17
CDY32742	Canola	plastid	52.81	51.17
CDY02774	Canola	plastid	52.68	50.91
GSMUA_Achr3P28040_001	Banana	cytosol	30.7	50.78
AT2G24050.1	Thale cress	plastid	50.54	50.47
GSMUA_Achr4P05970_001	Banana	cytosol	9.52	47.02
AT4G30680.1	Thale cress	mitochondrion, plastid	16.35	46.39
Solyc07g005780.1.1	Tomato	cytosol	26.81	44.44
GSMUA_Achr4P12750_001	Banana	cytosol	68.9	44.31
AT1G62410.1	Thale cress	cytosol	13.14	43.95
HORVU6Hr1G023180.1	Barley	cytosol	16.22	41.02
GSMUA_Achr11P...	Banana	cytosol	16.09	36.25
GSMUA_Achr2P18290_001	Banana	cytosol	20.91	23.71
Os06t0520600-01	Rice	extracellular	21.18	22.22
GSMUA_Achr11P...	Banana	nucleus	24.26	10.93
GSMUA_Achr11P...	Banana	nucleus	23.32	10.83
GSMUA_Achr8P14940_001	Banana	plastid	24.53	9.41
GSMUA_Achr2P18280_001	Banana	nucleus	11.39	8.3

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_AchrUn_randomG13090_001	EnsemblPlants:GSMUA_AchrUn_randomP13090_001	EnsemblPlants:GSMUA_AchrUn_randomT13090_001
InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	UniProt:M0U8R8	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0002957026	SEG:seg	:	:

Description

Eukaryotic initiation factor iso-4F subunit p82-34 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13090_001]

Coordinates

chrchrUn_random:-:63206792..63213729

Molecular Weight (calculated)

82701.3 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.418

Length

746 amino acids

Sequence
(BLAST)

001: MQSDPTVISL RPGGGGNRGS RLPAPRFDSA SLGSSDIPVL RPHGGAGAAL SLKTWDARFE NRERICYTKD QLLQIREHVE ALEDILKIKQ EIEAGLFIED
101: QTWSHGDANV LQWSSSNRLD ICQSQNRYYE PDNRDWRGRS GQLPSLRDEN PDNKESNILS SRSRETNQLN RQEQPSSQFS SKVQVSSTQG GPAAALIKAE
201: VPWSARRGSL TEKERVLKTV KGILNKLTPD KFDLLKGQLI DAGITTPDIL KGVITLIFEK AVLEPTFCPM YAQLCSDLNE KLPSFPSEEA NGREISFKRI
301: LLNNCQEAFE GAGQLRADIR KLTDEDQEME RRDKERMVKL RTLGNIRLIG ELLKQRMVPE KIVHHIVQEL LGPDNKACPA EENVEAICQL FNTIGKQLDE
401: SPKSRRFNDA YFNRLKELIT IPQLASRLRF MVQDVLDLRA NNWIPRREEV KAKTITEIHS EAEKNLGLRP GSTASLRNSR NTGGFPVNRP GTGARSVQKP
501: LVAKPSPINP KLLPQGSGGL VAGMTSALLQ GNGPQARSSS LVTGTKDSPS RNLPLRPGGR ALSPLISDKP VPTSKFNTNE LHKKTIALLE EYFHIRLIDE
601: ALQCIEELNS PEYYPEVVKE AVNLALEKGP SCMEPVMRLL EYLAVNKIFT SRDLGTGCLL YAAILDDIGI DLPRAPTYFG EITGKLVLAG GIDLTVVEQI
701: LKKVEDPLFR SMIFDAVTKA IRTSPNGQSI LSGQAAIISA CEKLLS

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.