Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05990_001 | Banana | cytosol | 18.83 | 28.57 |
| GSMUA_Achr3P28040_001 | Banana | cytosol | 40.36 | 19.96 |
| Solyc07g005780.1.1 | Tomato | cytosol | 35.43 | 17.56 |
| GSMUA_Achr4P06000_001 | Banana | cytosol | 3.14 | 17.07 |
| KRH72326 | Soybean | endoplasmic reticulum | 48.43 | 13.78 |
| KRH63081 | Soybean | endoplasmic reticulum | 47.09 | 13.57 |
| AT5G57870.1 | Thale cress | plastid | 47.09 | 13.46 |
| KRH03030 | Soybean | endoplasmic reticulum | 47.53 | 13.43 |
| Solyc12g009960.1.1 | Tomato | nucleus | 46.19 | 13.32 |
| Solyc07g005810.2.1 | Tomato | plastid | 46.19 | 13.32 |
| PGSC0003DMT400020464 | Potato | cytosol | 46.19 | 13.32 |
| PGSC0003DMT400029102 | Potato | cytosol, plastid | 46.19 | 13.21 |
| GSMUA_Achr9P22750_001 | Banana | plastid | 43.95 | 13.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.95 | 13.14 |
| KRH55033 | Soybean | endoplasmic reticulum | 45.29 | 13.03 |
| VIT_11s0037g00490.t01 | Wine grape | plastid | 45.74 | 12.85 |
| AT2G24050.1 | Thale cress | plastid | 41.7 | 12.45 |
| Os02t0611500-01 | Rice | cytosol | 43.5 | 12.44 |
| Zm00001d025777_P007 | Maize | plastid | 43.5 | 12.36 |
| EES12452 | Sorghum | cytosol | 43.05 | 12.14 |
| HORVU2Hr1G086240.1 | Barley | cytosol | 40.81 | 12.09 |
| Zm00001d003147_P001 | Maize | plastid | 42.15 | 11.96 |
| Os04t0499300-01 | Rice | plastid | 42.15 | 11.66 |
| TraesCS2D01G353600.1 | Wheat | cytosol, golgi, nucleus | 40.36 | 11.42 |
| TraesCS2B01G373600.1 | Wheat | cytosol | 40.36 | 11.41 |
| TraesCS2A01G354900.1 | Wheat | cytosol | 40.36 | 11.39 |
| VIT_04s0008g06770.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 44.39 | 11.21 |
| GSMUA_Achr4P12750_001 | Banana | cytosol | 45.74 | 8.79 |
| Os06t0520600-01 | Rice | extracellular | 24.22 | 7.59 |
| HORVU6Hr1G023180.1 | Barley | cytosol | 6.28 | 4.75 |
| AT4G30680.1 | Thale cress | mitochondrion, plastid | 5.38 | 4.56 |
| AT3G60240.4 | Thale cress | cytosol | 34.53 | 4.46 |
| GSMUA_Achr4P05970_001 | Banana | cytosol | 2.69 | 3.97 |
Protein Annotations
| Gene3D:1.25.40.180 | MapMan:35.1 | EntrezGene:842539 | ProteinID:AEE33963.1 | InterPro:ARM-type_fold | ArrayExpress:AT1G62410 |
| EnsemblPlantsGene:AT1G62410 | RefSeq:AT1G62410 | TAIR:AT1G62410 | RefSeq:AT1G62410-TAIR-G | EnsemblPlants:AT1G62410.1 | TAIR:AT1G62410.1 |
| Unigene:At.52323 | UniProt:F4HYS3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR016021 | InterPro:MIF4-like_sf |
| InterPro:MIF4G-like_typ-3 | RefSeq:NP_176431.1 | PFAM:PF02854 | PANTHER:PTHR23253 | PANTHER:PTHR23253:SF48 | SMART:SM00543 |
| SUPFAM:SSF48371 | UniParc:UPI00001631D2 | SEG:seg | : | : | : |
Description
MIF4G domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HYS3]
Coordinates
chr1:+:23092915..23093869
Molecular Weight (calculated)
25669.0 Da
IEP (calculated)
8.211
GRAVY (calculated)
-0.070
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLCPFLSL QRLTTLIFDK AVLEPTFCPM YAQLCFDIRH KMPRFPPSAP KTDEISFKRV LLNTCQKVFE RTDDLSEEIR KMNAPDQEAE REDEVRLLNL
101: RTLGNLRFCG ELFLKRMLTE KVVLAIGQKL LEDAEQMCPS EEKIIAICLF LNTVGKKLDS LNSKLMNEIL RRLKNLSNHP QLVMSLRLMV GKIIHLHSIG
201: IKSDPINMWE DSKCGYILGI ISM
101: RTLGNLRFCG ELFLKRMLTE KVVLAIGQKL LEDAEQMCPS EEKIIAICLF LNTVGKKLDS LNSKLMNEIL RRLKNLSNHP QLVMSLRLMV GKIIHLHSIG
201: IKSDPINMWE DSKCGYILGI ISM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.