Factsheet for GSMUA_Achr9P22750_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P05360_001
GSMUA_Achr3P27750_001
GSMUA_Achr4P05720_001
GSMUA_Achr4P12470_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001
GSMUA_Achr5P21990_001
GSMUA_Achr5P22630_001
GSMUA_Achr6P36010_001
GSMUA_Achr8P23820_001
GSMUA_Achr9P13950_001
GSMUA_Achr9P14160_001
GSMUA_Achr9P23140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P05360_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P27750_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P05720_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P12470_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P21990_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P22630_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr6P36010_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr8P23820_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P14160_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P23140_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P25000_001	AT5G35620.1	21798944
AT2G24050.1	GSMUA_Achr5P12940_001	AT5G35620.1	21798944
AT5G57870.1	GSMUA_Achr9P13950_001	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06000_001	Banana	cytosol	4.44	80.49
GSMUA_Achr4P05990_001	Banana	cytosol	13.44	68.03
GSMUA_AchrUn_...	Banana	cytosol	66.94	66.76
VIT_11s0037g00490.t01	Wine grape	plastid	64.38	60.33
CDY69274	Canola	cytosol, mitochondrion	26.34	59.94
KRH55033	Soybean	endoplasmic reticulum	60.62	58.19
Solyc07g005810.2.1	Tomato	plastid	59.95	57.7
CDY28211	Canola	mitochondrion	36.56	57.63
KRH72326	Soybean	endoplasmic reticulum	60.62	57.53
KRH63081	Soybean	endoplasmic reticulum	59.81	57.49
Bra011218.1-P	Field mustard	plastid	42.07	57.22
PGSC0003DMT400029102	Potato	cytosol, plastid	59.95	57.18
PGSC0003DMT400020464	Potato	cytosol	59.14	56.92
Zm00001d025777_P007	Maize	plastid	59.95	56.82
KRH03030	Soybean	endoplasmic reticulum	60.22	56.78
Solyc12g009960.1.1	Tomato	nucleus	58.47	56.27
GSMUA_Achr4P05970_001	Banana	cytosol	11.29	55.63
EES12452	Sorghum	cytosol	59.14	55.63
Zm00001d003147_P001	Maize	plastid	58.74	55.6
HORVU2Hr1G086240.1	Barley	cytosol	56.18	55.51
Os02t0611500-01	Rice	cytosol	58.06	55.38
TraesCS2A01G354900.1	Wheat	cytosol	58.6	55.19
TraesCS2B01G373600.1	Wheat	cytosol	58.47	55.13
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	58.33	55.08
CDY39236	Canola	cytosol	54.57	54.94
AT5G57870.1	Thale cress	plastid	57.39	54.74
CDY32742	Canola	plastid	56.32	54.42
Bra024051.1-P	Field mustard	cytosol	54.7	54.41
Bra020407.1-P	Field mustard	plastid	56.18	54.29
Os04t0499300-01	Rice	plastid	58.74	54.22
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	64.25	54.13
CDY02774	Canola	plastid	55.65	53.63
CDX68687	Canola	plastid	53.49	53.21
CDY28203	Canola	cytosol	36.42	53.03
Bra011211.1-P	Field mustard	plastid	53.36	53.0
CDX72262	Canola	cytosol	53.09	52.95
GSMUA_Achr3P28040_001	Banana	cytosol	31.45	51.88
AT2G24050.1	Thale cress	plastid	50.54	50.33
GSMUA_Achr4P12750_001	Banana	cytosol	77.96	50.0
AT4G30680.1	Thale cress	mitochondrion, plastid	16.13	45.63
Solyc07g005780.1.1	Tomato	cytosol	26.61	44.0
AT1G62410.1	Thale cress	cytosol	13.17	43.95
HORVU6Hr1G023180.1	Barley	cytosol	16.8	42.37
GSMUA_Achr11P...	Banana	cytosol	15.73	35.35
GSMUA_Achr2P18290_001	Banana	cytosol	20.7	23.4
Os06t0520600-01	Rice	extracellular	20.16	21.1
GSMUA_Achr11P...	Banana	nucleus	24.6	11.05
GSMUA_Achr11P...	Banana	nucleus	23.52	10.89
GSMUA_Achr8P14940_001	Banana	plastid	23.39	8.95
GSMUA_Achr2P18280_001	Banana	nucleus	11.69	8.5

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G22750_001	EnsemblPlants:GSMUA_Achr9P22750_001	EnsemblPlants:GSMUA_Achr9T22750_001	InterPro:IPR003891
InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	UniProt:M0U2N4	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847
PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544
SUPFAM:SSF48371	UniParc:UPI000296E4F2	SEG:seg	:	:	:

Description

Eukaryotic initiation factor iso-4F subunit p82-34 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22750_001]

Coordinates

chr9:+:27826496..27839109

Molecular Weight (calculated)

82225.6 Da

IEP (calculated)

7.732

GRAVY (calculated)

-0.402

Length

744 amino acids

Sequence
(BLAST)

001: MQTDQTVISL RPGGGGSGSR GSRIFGTRFD SSASAGVPIS LKVEQLFRVS SNIGSLFCQT GDSRFESREC IHYTKDQLLQ LREGVQTPED ILKLKQEIDA
101: ELFPENQIWG HSDANLASQS QSRYFEPESR DWRGRSGQST SFGDERSWDT IRENKESVDS GHQEIRQLNK QGSQFSSNTQ IGRTPALVKA EAPWSARRGN
201: LSEKDRVLKT VKGILNKLTP EKFDVLKGQL IDAGITTPDI LKGVITLIFE KAVFEPTFCP MYAQLCSDIN EKLPLFPPEE EGGKEIAFKR ILLNNCQEAF
301: EGADSLRAEL RKLTAPDQEM ERRDKERMVK LRTLGNIHLI GELLKQKMVP EKIVHHVAQE LLGHDGKTCP AEENVEAICQ LFNTIGKQLD ASPKSRHFND
401: AYFNRLKELA SNPQLASRLR FMVRDVLDLR ANNWVPRREE VKAKTISEIH TEAEKNLGLR PGATASMRNS RDISTLGGIN TTGFPVNRPG IGVPRSKSMP
501: RGDANRVRSS PVAKSSSINS KFLPQGSGNL ISGKTSALLQ GSGPPARSST LVSGILDSPS PSSGSLRPVG QVPPAMIPER SVATTKLDPM ELHKKTVALL
601: EEYFHIRILD EALQCVEELK SPEYHPEVVK EAINLALDKG PSCVELLMKL LEHLLIKKVF TPRDLGTGCL LYGAMLDDVG IDLPKAPAFF GEVVGKLILV
701: HGVDFKVVEE ILKKVEDANF QSAIFDCVLR TLQPSPDGQP PLTT

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.